Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3667 ATGGATACCAAGGTTAAGAAAAATGAGTCTACAAACCTCAATGAATTAAGAAAGGGCCCATGGACGTTAGAAGAGGACACCATTCTGGTTAATTACATTACAACCCATGGTGAAGGTCACTGGAACACTGCAGCTTCTTCTGCAGGTTTAAAGAGAAGTGGGAAAAGTTGCAGATTAAGGTGGCTAAATTACTTGCGTCCCGATGTTCGACGTGGAAATATCACACTCCAAGAACAGATTCTTATTCTTGAACTCCATTCTCGCTGGGGCAATAGGTGGTCGAAAATTGCGCAGCATCTTCCGGGAAGAACAGACAATGAAATAAAGAACTATTGGAGAACTAGAGTGATCAAGCAAGCGAAGCAGCTAAAGTGCGATGTCAATAGTAAACAGTTCAGAGATGTCTTGCGTTACGTGTGGATGCCCCGTTTGCTTGAACAGGTTCAAACGGCATCCGCGTCTGGATTTCACGACCCGAATAAACCCGACTTCGTTCTTCATCACAACACATCGCACAGTTCAGTTTCAGGAACAGAGTGGCCAAAAACAAACTCCTCAAGTGTTACCTCGGAATCTTCATCACTGGAATTCCAAGCTCCTTCGATTTCAGACCATGAAGTGCTGCCAAGTTTCAATAACCAGGTTCCAGAACAAGGGAATAGTAGTGGTGGTGGTGATGATGGTGATGATGATGACTCGTTGGAGACTTTTTTGAACGATGAGAGCATGTGGTTTTTGCAACAACTTTCTGAAGATTTTGAAATAAAATACAATTTACTTGCGTGA 786 0.43 MDTKVKKNESTNLNELRKGPWTLEEDTILVNYITTHGEGHWNTAASSAGLKRSGKSCRLRWLNYLRPDVRRGNITLQEQILILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDVLRYVWMPRLLEQVQTASASGFHDPNKPDFVLHHNTSHSSVSGTEWPKTNSSSVTSESSSLEFQAPSISDHEVLPSFNNQVPEQGNSSGGGDDGDDDDSLETFLNDESMWFLQQLSEDFEIKYNLLA* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3667 261 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Psa6g3667 261 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Psa6g3667 261 CDD SANT 20 65 IPR001005 -
Psa6g3667 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
Psa6g3667 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Psa6g3667 261 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Psa6g3667 261 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Psa6g3667 261 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Psa6g3667 261 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 7 248 - -
Psa6g3667 261 Gene3D - 75 116 - -
Psa6g3667 261 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 7 248 IPR044676 GO:0003700|GO:0006355|GO:0043565
Psa6g3667 261 MobiDBLite consensus disorder prediction 170 196 - -
Psa6g3667 261 CDD SANT 75 114 IPR001005 -
Psa6g3667 261 Gene3D - 18 70 - -
Psa6g3667 261 SMART sant 17 67 IPR001005 -
Psa6g3667 261 SMART sant 70 118 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3667 Psa-Chr6 318812667 318813632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3667 15 156 MYB Transcription Factor Family AT1G48000 72.535 5.26e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa6g3667 Myb_DNA-binding 4.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3667 K09422 - gmx:778065 281.567