Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3654 ATGAGCGGAAAAGTACTAGTCTCTGGTGTATCCATCATTCTTGTGGTGGGTGTTGCCATCGGTGTCGTTGTCGTCGTTAACAAAAAGGGTAGTGATCCTCAAATAGCAGCACACGAGAAAAATGTGCAATCCATGTGTCAAGCAACTGAAGATCAACAACTTTGTCATGACACTCTTATCAGCGCGAAACCGGCCAATTCCTCCGATCCAACAGCTTATTTAGCAACTGTAGTTCAAGCGAGTGCGCAAAGCGTTATCGCTGCATTGAATATGAGTGATCGGCTATCGGTTGAACACGGTGACAAAGACCCCGGTATCAAAATGGCACTGGATGATTGCAAAGACTTAATGCAATTCGCTCTCGATAGTCTTGAAGCTTCGGCTAATTTGGTTCGCGATAACAACATTCAGGCGATTCATGAACAGACGCCTGACTTTAGAAACTGGTTGAGCGCTGTTATATCGTACCAACAGTCGTGTAGCGACGGGTTCAGTAACGGGACAAACGGCGAGGATAAGATCAAAGAACAGTTGCACACAGAAAGTTTGGACAAAATGGAGAAACTAACCGGCATCACACTTGACATTGTAGCTAGTATGGCTAACATCCTTCAGGCTTTCGACTTGAAGCTGGAATTGAATCCAGCTTCTCGTCGTCTTCTGGACGCTAACGAGATTGACAATGAAGGACTGCCTACATGGTTCTCTGCTACAGATCGTAAGCTACTGGCTCAGCCAGGTGGAGGTCCTCCCCCAAATGCAGTAGTTGCGAAAGATGGTAGTGGCAAATTTAAGTCAGTTAAAGCAGCTATTGATTCATACCCTAAGGATTTCAAAGGAAGATTCATTATCTATGTTAAGGCCGGAATCTACGACGAGTACATCACCATTCCGAAAAAGTCGATTAACATTCTTATGTACGGTGATGGCCCTACAAAGACCATTATCACCGGTCGCAAAAACTTCGCCGATGGCGTGAAGACAATGCAGACAGCCACATTCGCGAATACTGCAAATGGATTCATTGCAAAATCAATTGCATTCGAGAACACAGCAGGTCCAGAAAAACATCAAGCAGTGGCATTTAGAAACCAAGGAGACATGTCAGCGTTCTTCGACTGCGCCATGCATGGTTTCCAAGACACATTATACGTCCAAACCAATCGTCAATTCTACCGCAACTGTGAAATCTCTGGCACAGTAGACTTCATATTCGGCACATCTCCAACCTTGATTCAAAACTCAAGAATCATCGTCCGAAAACCAGGACCAGGTCAGTTCAACACAGTAACCGCGGACGGAACAAAGCAGCGTAACATGGCGACAGGAATCGTGATCCAGAACTGCGAAATCGTTCCAGAGAATGCTTTGTTCCCGGTCAGGATGCAGTTCAAGTCATACTTGGGTAGGCCATGGAAAGACTACTCTAGGACAGTTGTTATGGAATCGAACATTGGCGATCTTATCACACCAGAAGGGTGGAGTCCTTGGGCTGGAACTCAATTTCTGAATACATTGTATTATGCAGAGTATGCTAATACTGGACCTGGTGCTAATCTTAATGGAAGGGTTAAGTGGAAAGGTTATCATCCAAATATAAATCAGAATGAAGCTGCTCAATTCACTGCAGGACAGTTCCTTAGAGCTGGACCAGGTGGAAGAGCTGAGGATTGGTTGAGGGCTACTGGTGTTCCTTATGTACTTGGATTTGGAAAATAG 1719 0.4503 MSGKVLVSGVSIILVVGVAIGVVVVVNKKGSDPQIAAHEKNVQSMCQATEDQQLCHDTLISAKPANSSDPTAYLATVVQASAQSVIAALNMSDRLSVEHGDKDPGIKMALDDCKDLMQFALDSLEASANLVRDNNIQAIHEQTPDFRNWLSAVISYQQSCSDGFSNGTNGEDKIKEQLHTESLDKMEKLTGITLDIVASMANILQAFDLKLELNPASRRLLDANEIDNEGLPTWFSATDRKLLAQPGGGPPPNAVVAKDGSGKFKSVKAAIDSYPKDFKGRFIIYVKAGIYDEYITIPKKSINILMYGDGPTKTIITGRKNFADGVKTMQTATFANTANGFIAKSIAFENTAGPEKHQAVAFRNQGDMSAFFDCAMHGFQDTLYVQTNRQFYRNCEISGTVDFIFGTSPTLIQNSRIIVRKPGPGQFNTVTADGTKQRNMATGIVIQNCEIVPENALFPVRMQFKSYLGRPWKDYSRTVVMESNIGDLITPEGWSPWAGTQFLNTLYYAEYANTGPGANLNGRVKWKGYHPNINQNEAAQFTAGQFLRAGPGGRAEDWLRATGVPYVLGFGK* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3654 572 CDD PMEI-like_3 44 202 - -
Psa6g3654 572 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Psa6g3654 572 Gene3D - 251 570 IPR012334 -
Psa6g3654 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Psa6g3654 572 TIGRFAM PME_inhib: pectinesterase inhibitor domain 22 198 IPR006501 GO:0004857
Psa6g3654 572 SUPERFAMILY Pectin lyase-like 250 567 IPR011050 -
Psa6g3654 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 200 IPR035513 -
Psa6g3654 572 Pfam Plant invertase/pectin methylesterase inhibitor 41 196 IPR006501 GO:0004857
Psa6g3654 572 SMART PMEI_2 37 196 IPR006501 GO:0004857
Psa6g3654 572 PANTHER PECTINESTERASE 3 570 - -
Psa6g3654 572 Pfam Pectinesterase 253 548 IPR000070 GO:0030599|GO:0042545
Psa6g3654 572 PANTHER PECTINESTERASE 3 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3654 Psa-Chr6 317148410 317150913 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3654 39 570 Carbohydrate Esterase AT2G26450 41.604 4.09e-140 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3654 K01051 - gmx:100775246 879.782