Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3650 ATGGATGTGGAGAATGGTAGTGATGAGATAGGAAATAATCATAAGCATGATGAAGCAACAACTTCTGAAAAGAATGGTGTAGAAACAAGTACAAAGGGTGAAAAGGAGAAAGAAAAGGAAAAACAAGAGACAGTTCCATTTCACAAATTATTCACTTTTGCAGATTCTACAGACATTTTGTTAATGGTGGTTGGAACTATAGGTGCTGTTGGAAACGGTTTGGGTTTACCTCTCATGACTTTGTTGTTTGGTCAAATGATAAATAGTTTCGGTAGTAACCAAAGTAACATAGATGATGTTGTTGAACAAGTGTCCAAGGTATCTCTGAGATTTGTTTATTTGGCCGTAGGATGTGGTGTGGCAGCATTTTTACAGGTGAGTTGTTGGATGCTGATAGCAACATTCATTGGTGGTTTTGCAATAGCATTTACCAAAGGGTGGCTTCTTACTCTTGTTATGATGTCGACTCTTCCGCTTCTCGCTGTGTCAGGTGCTGCCATGGCTGTTATCATAGGGAAGATGGCTTCTAAAGGCCAAACCGCTTATGCGAAAGCTGCACATGTTGTTGAACAAACAATTGGCTCAATAAGAACGGTTGCATCCTTTACTGGCGAAAAGCAAGCAGTGTCTAGTTATAAAGTATTTCTTGTAGATGCTTACAAATCAGGAGTTTTTGAAGGTACTATAGCTGGAGTAGGCTTAGGCACAGTTATGTTTGTTATTTTCTGTGGTTATGCTTTAGCTGTATGGTTTGGTGCGAAGATGATAATCGAAAAAGGATATAATGGCGGCACCGTGATTAATGTGATTATCGCCGTGTTAACTGCTTCCATGTCTCTAGGCCAGGCATCACCAAGTCTGAGTGCTTTTGCGGCGGGTCAGGCGGCGGCTTACAAAATGTTTGAGACAATTAAGAGGAAACCAGAGATAGATACTTATGATCCAAATGGAAAAACATTTGGAAGACATTCAAGTCTTATTGATGGTATTAACTTGAAAGATTCAGCTCAGATGGATCAGAGGGAAATCGGTCTTGTCAGCCAGGAGCCGGTGTGTGTTTCTTCCAGCATTAAGGAGAACATGCTTACGGGATTGGATACAATGGTGGTGACCACGGAACTCAGCTATCTGGATCATGGTCAATCGAACCACGCCTGTGTTGTTGCACATCGCTTGAGTACAATTAGAAATGCTGACATGATTGCTGTGATCCATAGAGGGAAAATGGTTGAGAAAGGAACACACTCAGAATTACTAAAGGATCCTGAAGGAGCTTATTCACAACTCATACGCTTACAAGAAGTAAACCGAGAATCAGACGAAACTTCCGATAATAACGGCAAGAGACAACTTTCTGCAGAATCCTTTAGACATTCGAGTCAAAAGAAGTCGCTTCAAAGATCTATCAGTAGGGGATCATCTTTAGGAAATAGCAGTCGCCATTCATTTTCAGTTTCATTCGGTTTACCGACAGGTGTTAATGTCGCTGATCCTGAAATTGAAGATTTACCAACCAAAGAAAAAGCACAAGAAATTCCACTAAGCCGCCTTGCTTCCCTCAACAAGCCAGAGATTCCAGTTCTACTTATTGGATGTTTAGCTGCCATAGGAAACGGTGTTATACTTCCAATATTCGGTGTTCTGATTTCTAGTATCATCAAAACATTTTATGAACCATTTGATGAAATGAAAAAGGATTCCAAGTTTTGGGCGATAATGTTTATGCTCCTTGGTCTTGCATCATTGGTGGTGATTCCAGCCCGTGGTTATTTTTTCTCTGTGGCCGGATGCAAGTTAATCGAACGTATCAGGCTGATATGTTTTGAGAAGGTGGTGAGCATGGAGGTAGGTTGGTTCGATGAGCCTGAAAACTCTAGCGGTGCTGTCGGTGCAAGGCTCTCGGCAGATGCTGCTTCCGTGCGCGCGCTTGTTGGTGATGCACTAGGACTGTTGGTTCAGAATTTGGCTACTGCATTGGCTGGTTTGATTATTGCTTTCGTTGCGAGCTGGCAGCTCGCGTTGATTATTCTTGTCTTGATTCCTCTCATTGGAGTCAATGGCTATGTTCAAATGAAATTCATGAAGGGATTCAGTGCTGATGCAAAGATGATGTACGAGGAGGCTAGTCAAGTTGCAAATGATGCAGTTGGAAGCATAAGAACTGTGGCATCTTTCTGTGCTGAAGATAAGGTTATGGAACTATATAGGAAGAAATGTGAAGGTCCCATGAAAACAGGAATAAGGCAAGGAATAATCAGTGGAACAGGCTTTGGAGTTTCGTTTTTCTTATTGTTTTGTGTCTATGCAACAAGTTTCTACGCAGGAGCTAGACTCGTGAAAGCTGGGGACGCAACATTTTCCGATGTTTTCCGGGTTTTCTTCGCATTAACTATGGCGGCTATTGGTGTTTCTCAGTCAAGTTCCTTTGCTCCTGATTCGAGTAAAGCAAAATCAGCTACAGCTTCCATATTTGGAATGATTGATAAGAAATCAAAGATAGATCCAAGTGATGAATCCGGTACAACTCTAGATAGCGTCAAAGGCGAAATTGAACTTCGTCATATAAGCTTCAAGTATCCGTCTAGGCCAGATATTCCGATTTTCCGAGACCTCAACTTGACCATTCATTCTGGCAAGACAGTAGCACTTGTTGGTGAAAGTGGAAGCGGGAAATCAACGGTGATTGCTTTGTTGCAAAGATTTTATGATCCTGATTCAGGTGTCATCACACTCGACGGAATAGAAATTCGCGAATTACAGCTTAAGTGGTTAAGACAACAGATGGGCCTCGTAAGCCAAGAGCCGGTATTATTCAATGACACAATCCGTGCGAATATCGCCTATGGAAAAGGTGGCAATGCAACTGAGGCAGAAATCATAGCCGCATCTGAATTAGCCAATGCTCACAGATTCATCAGTGGCTTACAACATGGTTATGATACAGTAGTGGGAGAGAGGGGAACTCAATTATCAGGTGGACAGAAACAAAGGGTGGCCATTGCACGTGCAATAATCAAAAGTCCAAAGATATTGTTACTTGACGAGGCCACAAGTGCATTAGACGCTGAGTCAGAGAGAGTTGTTCAAGATGCATTGGACAAAGTAATGGTGAATAGGACCACTGTGGTTGTGGCACATCGTTTATCAACAATTAAAAACGCAGATGTTATTGCGGTTGTCAAGAATGGAGTTATAGTTGAAAAAGGAAGACATGAAACACTTATTAATGTGAAGGATGGATTCTATGCTTCCTTAGTTCAACTTCATACAAGTGCTAAAACAGTATGA 3288 0.4173 MDVENGSDEIGNNHKHDEATTSEKNGVETSTKGEKEKEKEKQETVPFHKLFTFADSTDILLMVVGTIGAVGNGLGLPLMTLLFGQMINSFGSNQSNIDDVVEQVSKVSLRFVYLAVGCGVAAFLQVSCWMLIATFIGGFAIAFTKGWLLTLVMMSTLPLLAVSGAAMAVIIGKMASKGQTAYAKAAHVVEQTIGSIRTVASFTGEKQAVSSYKVFLVDAYKSGVFEGTIAGVGLGTVMFVIFCGYALAVWFGAKMIIEKGYNGGTVINVIIAVLTASMSLGQASPSLSAFAAGQAAAYKMFETIKRKPEIDTYDPNGKTFGRHSSLIDGINLKDSAQMDQREIGLVSQEPVCVSSSIKENMLTGLDTMVVTTELSYLDHGQSNHACVVAHRLSTIRNADMIAVIHRGKMVEKGTHSELLKDPEGAYSQLIRLQEVNRESDETSDNNGKRQLSAESFRHSSQKKSLQRSISRGSSLGNSSRHSFSVSFGLPTGVNVADPEIEDLPTKEKAQEIPLSRLASLNKPEIPVLLIGCLAAIGNGVILPIFGVLISSIIKTFYEPFDEMKKDSKFWAIMFMLLGLASLVVIPARGYFFSVAGCKLIERIRLICFEKVVSMEVGWFDEPENSSGAVGARLSADAASVRALVGDALGLLVQNLATALAGLIIAFVASWQLALIILVLIPLIGVNGYVQMKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEDKVMELYRKKCEGPMKTGIRQGIISGTGFGVSFFLLFCVYATSFYAGARLVKAGDATFSDVFRVFFALTMAAIGVSQSSSFAPDSSKAKSATASIFGMIDKKSKIDPSDESGTTLDSVKGEIELRHISFKYPSRPDIPIFRDLNLTIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGVITLDGIEIRELQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGNATEAEIIAASELANAHRFISGLQHGYDTVVGERGTQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLINVKDGFYASLVQLHTSAKTV* 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3650 1095 ProSitePatterns ABC transporters family signature. 990 1004 IPR017871 GO:0005524
Psa6g3650 1095 SUPERFAMILY ABC transporter transmembrane region 48 311 IPR036640 GO:0005524|GO:0016021
Psa6g3650 1095 Gene3D ABC transporter type 1, transmembrane domain 818 1093 IPR036640 GO:0005524|GO:0016021
Psa6g3650 1095 Gene3D ABC transporter type 1, transmembrane domain 40 132 IPR036640 GO:0005524|GO:0016021
Psa6g3650 1095 Gene3D ABC transporter type 1, transmembrane domain 133 316 IPR036640 GO:0005524|GO:0016021
Psa6g3650 1095 Gene3D ABC transporter type 1, transmembrane domain 508 817 IPR036640 GO:0005524|GO:0016021
Psa6g3650 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 840 1088 IPR027417 -
Psa6g3650 1095 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 529 815 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g3650 1095 Pfam ABC transporter 869 1018 IPR003439 GO:0005524
Psa6g3650 1095 MobiDBLite consensus disorder prediction 435 477 - -
Psa6g3650 1095 CDD ABC_6TM_Pgp_ABCB1_D2_like 518 833 - -
Psa6g3650 1095 Gene3D - 840 1090 IPR027417 -
Psa6g3650 1095 Gene3D - 385 434 IPR027417 -
Psa6g3650 1095 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 385 1091 - -
Psa6g3650 1095 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 131 320 - -
Psa6g3650 1095 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 326 366 - -
Psa6g3650 1095 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 21 131 - -
Psa6g3650 1095 MobiDBLite consensus disorder prediction 7 41 - -
Psa6g3650 1095 MobiDBLite consensus disorder prediction 1 41 - -
Psa6g3650 1095 SMART AAA_5 877 1070 IPR003593 -
Psa6g3650 1095 SUPERFAMILY ABC transporter transmembrane region 516 834 IPR036640 GO:0005524|GO:0016021
Psa6g3650 1095 MobiDBLite consensus disorder prediction 448 477 - -
Psa6g3650 1095 PANTHER - 21 131 - -
Psa6g3650 1095 PANTHER - 131 320 - -
Psa6g3650 1095 PANTHER - 385 1091 - -
Psa6g3650 1095 PANTHER - 326 366 - -
Psa6g3650 1095 CDD ABC_MTABC3_MDL1_MDL2 850 1088 - -
Psa6g3650 1095 Pfam ABC transporter transmembrane region 528 800 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g3650 1095 Pfam ABC transporter transmembrane region 132 278 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g3650 1095 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 850 1087 IPR003439 GO:0005524
Psa6g3650 1095 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 129 292 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g3650 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 433 IPR027417 -
Psa6g3650 1095 CDD ABC_6TM_Pgp_ABCB1_D1_like 62 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3650 Psa-Chr6 316542972 316548017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3650 35 364 Calmodulin-binding Proteins AT2G36910 28.160 5.30e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3650 K05658 - gmx:100777909 1560.81