Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3642 ATGGGTAAACCTTCCACTTCTTCTTCCTCTTCTTCCAACAGTAGAAGAAGAACACACAACAATTCCTCCTATCTTTCTTCCTCTATCACACACCAAAACATTGATGAACAACAACATCTTCATCCTGATCTTAACCTTGGATTGAGCATTTCCACTTCAACGGGACATTGGCAACCATTCCAGCACCAACGAGGTGGTGAAGTGAATGATTGCGCCGATTATGGCAGTTTCTTTGTCAAGGTTTACATGGAAGGGATTCCTATTGGGAGAAAACTCAATTTATTAGCTCATAATTGCTATCAAGAGTTAGTCAATACTCTTGAACATATGTTCGACACTACAATTCTATGGGGCACTGAGATGGATGGAATGCAATCAGAGAGATGTCATGTCTTAACTTATGAAGATGGAGAAGGGGATTTGATTATGGTTGGTGATGTACCTTGGGAGATGTTCTTATCATCTGTGAAGAGGTTGAAGATCACAAGGGTCGACACATTCGGGTGTTGA 510 0.4098 MGKPSTSSSSSSNSRRRTHNNSSYLSSSITHQNIDEQQHLHPDLNLGLSISTSTGHWQPFQHQRGGEVNDCADYGSFFVKVYMEGIPIGRKLNLLAHNCYQELVNTLEHMFDTTILWGTEMDGMQSERCHVLTYEDGEGDLIMVGDVPWEMFLSSVKRLKITRVDTFGC* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3642 169 PANTHER AUXIN-INDUCED PROTEIN 2 168 - -
Psa6g3642 169 MobiDBLite consensus disorder prediction 1 22 - -
Psa6g3642 169 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 168 IPR003311 GO:0005634|GO:0006355
Psa6g3642 169 Pfam AUX/IAA family 73 163 IPR033389 -
Psa6g3642 169 Gene3D - 70 168 - -
Psa6g3642 169 ProSiteProfiles PB1 domain profile. 76 166 IPR000270 GO:0005515
Psa6g3642 169 SUPERFAMILY CAD & PB1 domains 75 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3642 Psa-Chr6 315662464 315664592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3642 80 161 B3 DNA Binding Superfamily AT4G23980 36.585 2.62e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Psa6g3642 AUX_IAA 5.9e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3642 K14484 - gmx:100784866 224.942