Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3627 ATGGGAAGACACTCTTGCTGCTACAAGCAGAAGCTTAGGAAGGGACTATGGTCACCAGAAGAAGATGAAAATAATGATTCCGTATATTGTTTTATACCGGTACCTACGACCTCTTCTGTGCCTAAACAAGCAGGTTTGCAAAGATGTGGTAAGAGTTGCAGACTTAGATGGATTAATTACTTAAGACCTGATTTAAAAAGAGGAACATTTTCTCAAGATGAAGAGAATCTCATTGTTGAACTTCATGCAGTATTAGGCAATAGATGGTCTCAAATTGCGGCGCAATTGCCGGGGAGGACTGACAATGAAATAAAGAATTTATGGAACTCTTGTTTGAAGAAGAAACTGCGGCAAAAAGGTATAGATCCTGTAACTCATAAACCATTGAGTGAGGTTGAGAATAATGGAGAGGAAAGTTCCAAGAGTCAAGAGAAAGCCCAGCCGGAGCTATTGTTATTATCCTCGAATGAATTGAACCTTTTGAAATCGGAGAGTTCTAAATCAGATGCAGCTTCTAGCTATGATCAGAGAACGTCATCTTCGATTTCGCCGAAAGATTATGCGCTAGAAATAGAAGGCTCTTGCAACAAAGAGTTTTTCATTGACAGGTTCATGAGTTCCAACTCTCACCACTCGGATTTGATGGGAAATTATCCGATTCAGATGAGTTACGCCAGCAACGAAAATGATAGTAACCATTGGTTTAACCAATCTGGAAAAACTTATGATATGAAATATTCTGATCAGTTTCATTTCAATTCTGCTACGGCTGCAACAACTATGTTTCTTCCTAATTCCTTTTGCTGCAACAATCCGCTCGATATTCCTCCATCAGAAAATGTTTCTACCGAGATGATGAAAAGTGATAGCAATACATTAAACTTGCAAAACAACAACTTTTCTTGGGGAGGATTGATGGAAAATCATCAAACCGAAGAAGCGAAGTGGGATAATAATAATAATAATGATAATGATAATGACTACTTTCAGAATCCTATTTTAATGTTGGCTTCTGAATCTTTATGCAACGAGATAAAACCGCAAATGAATTTGTTACCGGATAATTTCGGGACTATTTTGCCTCATACAAAGCAAGAACAATCACATACACAACAAACTTCTAATATCTTTTCTAAGGATATTCAGAAACTCAGAGAAGCTTTTGGAGATATGTGA 1176 0.3741 MGRHSCCYKQKLRKGLWSPEEDENNDSVYCFIPVPTTSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQDEENLIVELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPVTHKPLSEVENNGEESSKSQEKAQPELLLLSSNELNLLKSESSKSDAASSYDQRTSSSISPKDYALEIEGSCNKEFFIDRFMSSNSHHSDLMGNYPIQMSYASNENDSNHWFNQSGKTYDMKYSDQFHFNSATAATTMFLPNSFCCNNPLDIPPSENVSTEMMKSDSNTLNLQNNNFSWGGLMENHQTEEAKWDNNNNNDNDNDYFQNPILMLASESLCNEIKPQMNLLPDNFGTILPHTKQEQSHTQQTSNIFSKDIQKLREAFGDM* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3627 391 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa6g3627 391 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Psa6g3627 391 Gene3D - 30 66 - -
Psa6g3627 391 PANTHER MYB DOMAIN PROTEIN 55 1 363 - -
Psa6g3627 391 SUPERFAMILY Homeodomain-like 7 65 IPR009057 -
Psa6g3627 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Psa6g3627 391 SUPERFAMILY Homeodomain-like 47 119 IPR009057 -
Psa6g3627 391 MobiDBLite consensus disorder prediction 123 144 - -
Psa6g3627 391 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa6g3627 391 Gene3D - 68 148 - -
Psa6g3627 391 MobiDBLite consensus disorder prediction 123 147 - -
Psa6g3627 391 SMART sant 66 114 IPR001005 -
Psa6g3627 391 SMART sant 13 63 IPR001005 -
Psa6g3627 391 PANTHER MYB DOMAIN PROTEIN 55 1 363 - -
Psa6g3627 391 CDD SANT 69 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3627 Psa-Chr6 307481460 307483702 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3627 1 152 MYB Transcription Factor Family AT4G01680 76.974 8.91e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa6g3627 Myb_DNA-binding 7.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3627 K09422 - gmx:100815881 431.409