Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3622 ATGGCATCTTCATTCTCAACTCAGCTGGTGCAGAGTCAGAACCTACTCCCTCGCTTTCATGCTGTCCAGGGAAAGCCACATGTAGTTTGTAGCATTGGATACAGTAAATTGTCATCAAGATATCATTATGCACCAAGGCTTTCTGTTTCACAACAATCTAAAGCCAAATCAATCACTTCTCGGAGAATAACATGTGCTAGTGCTCAGGGAGATGTTGCAGAGCTGCAAGCCAAAGTGACAAGCAAATGTTTCTTTGATGTAGAAATCGGAGGCGAATCGGCTGGAAGGATTGTAATTGGTCTATTTGGAGAGGCTGTTCCCAAAACAGTTGAGAATTTCAAAACTTTGTGTACAGGAGGGAAAGGATATGGTTACCAAGGAAGCTACTTCCATCGTATAATACAGAATTTCATGATTCAGGGAGGCGACTTCACCGAAGGAAATGGAACTGGTGGAGTCAGTATCTATGGTTCTAAATTTGAAGATGAGAATTTTGATTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCGAATGCCGGTCCTAATACCAATGGCAGTCAGTTTTTTATTTGCACTGTGCCGACTCCATGGTTAGACAACCGCCATGTTGTGTTTGGACATGTCATTGAAGGACTGGATATTGTGAAGAAACTCGAATCACAGGAGACAAGCAAGCTAGACAATAGTCCCAAGAAACAGTGCAAAATTGCCAAGTCTGGAGAACTGCCTCTAGATGGTTGA 744 0.4288 MASSFSTQLVQSQNLLPRFHAVQGKPHVVCSIGYSKLSSRYHYAPRLSVSQQSKAKSITSRRITCASAQGDVAELQAKVTSKCFFDVEIGGESAGRIVIGLFGEAVPKTVENFKTLCTGGKGYGYQGSYFHRIIQNFMIQGGDFTEGNGTGGVSIYGSKFEDENFDLKHVGPGVLSMANAGPNTNGSQFFICTVPTPWLDNRHVVFGHVIEGLDIVKKLESQETSKLDNSPKKQCKIAKSGELPLDG* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3622 247 CDD cyclophilin_ABH_like 81 241 - -
Psa6g3622 247 Gene3D - 70 246 IPR029000 -
Psa6g3622 247 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 85 240 IPR002130 GO:0000413|GO:0003755
Psa6g3622 247 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 125 142 IPR020892 GO:0003755|GO:0006457
Psa6g3622 247 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 35 246 - -
Psa6g3622 247 SUPERFAMILY Cyclophilin-like 73 243 IPR029000 -
Psa6g3622 247 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 35 246 - -
Psa6g3622 247 MobiDBLite consensus disorder prediction 226 247 - -
Psa6g3622 247 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 101 116 IPR002130 GO:0000413|GO:0003755
Psa6g3622 247 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 130 142 IPR002130 GO:0000413|GO:0003755
Psa6g3622 247 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 188 IPR002130 GO:0000413|GO:0003755
Psa6g3622 247 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 188 200 IPR002130 GO:0000413|GO:0003755
Psa6g3622 247 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 201 216 IPR002130 GO:0000413|GO:0003755
Psa6g3622 247 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 84 242 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3622 Psa-Chr6 307306349 307307725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3622 95 240 U-box Gene Family AT5G67530 46.939 4.19e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3622 K03768 - gmx:100526955 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3622 6 307306349 307307725 Psa6g3622 6 307306349 307307725 ECH