Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3618 ATGGAGAAGCTAATTTTCATTGGTGTTGTAGTGCTTATGGGATTGTTCACCTCAGAACTAAGAGTAACATCAGCAGTTTGGCAGCGAGCTCATGCAACTTTCTATGATGGACCTAAGGGAGGTGCATGTGGGTATGGAGATCAACTAATAGGTGATTATGGAACAAACACAGCTGCTTTGAGTATGGTTTTGTTTAATGATGGGAAATCATGTGGTGGTTGCTATCAGATTGTTTGTGATGCAAGTCAAGTCCCCCAATGGTGCCACAAGGGAACTTCCATAACAGTTACTGCCACTAATTTCTGTCCCCCAAACTATAATCTCCCTAATGACAATGGTGGTTGGTGTAATCCTCCTAGACCACATTTTGACATGTCTCAATCCGCTTTCGAATCCATCGCGATTTATAGAGCCGGGATCGTTCCAATCTTTTACCGAAAAGTTTGGTGCAAAAAAAGAGATGGAGGCATGAAATTTACAATGAATGGGAATGATTACTTTAATTTAGTGGTTATAAGCAATGTAGGGGGAGCAGGGGATATTTCCAATGTTTGGATCAAAGGGTCAAAAATGGAAAAATGGGAATCCATGTCAAAGAATTGGGGTGCTAACTGGCTAAGCTCAAGGTATCTTAATGGTCAAAGCTTGTCCTTCAGAATTCAACTCAGTGATGGAAGAAGTGTTATAGCTAAAGATGTGGTTCCCTCTAATTGGAGATTTGGTCAAACATTCTTCAGCAATGTTAAGCTCTGA 753 0.4077 MEKLIFIGVVVLMGLFTSELRVTSAVWQRAHATFYDGPKGGACGYGDQLIGDYGTNTAALSMVLFNDGKSCGGCYQIVCDASQVPQWCHKGTSITVTATNFCPPNYNLPNDNGGWCNPPRPHFDMSQSAFESIAIYRAGIVPIFYRKVWCKKRDGGMKFTMNGNDYFNLVVISNVGGAGDISNVWIKGSKMEKWESMSKNWGANWLSSRYLNGQSLSFRIQLSDGRSVIAKDVVPSNWRFGQTFFSNVKL* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3618 250 Gene3D - 156 250 IPR036749 -
Psa6g3618 250 Gene3D - 16 151 IPR036908 -
Psa6g3618 250 SMART dpbb_1 57 145 IPR007112 -
Psa6g3618 250 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Psa6g3618 250 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Psa6g3618 250 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Psa6g3618 250 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Psa6g3618 250 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Psa6g3618 250 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
Psa6g3618 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 246 IPR007117 -
Psa6g3618 250 Pfam Lytic transglycolase 57 145 IPR009009 -
Psa6g3618 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 155 IPR007112 -
Psa6g3618 250 PANTHER EXPANSIN-A15 7 249 IPR002963 GO:0009664
Psa6g3618 250 PANTHER EXPANSIN 7 249 - -
Psa6g3618 250 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Psa6g3618 250 SUPERFAMILY Barwin-like endoglucanases 20 174 IPR036908 -
Psa6g3618 250 PRINTS Expansin signature 52 66 IPR002963 GO:0009664
Psa6g3618 250 PRINTS Expansin signature 81 92 IPR002963 GO:0009664
Psa6g3618 250 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Psa6g3618 250 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Psa6g3618 250 PRINTS Expansin signature 130 143 IPR002963 GO:0009664
Psa6g3618 250 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Psa6g3618 250 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Psa6g3618 250 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Psa6g3618 250 PRINTS Expansin signature 232 248 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3618 Psa-Chr6 306738239 306739896 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3618 1 250 Expansin Gene Family AT4G01630 63.672 4.98e-118 336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0368 3 35289556 35290898 Psa6g3618 6 306738239 306739896 PCT