Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3600 ATGACAAGAAAGAAGGTGAAACTTGCGTTCATCTCCGACGATTCGGCGAGGAAAGCAACGTACAAGAAAAGGAAGAAAGGTATTCTCAAGAAGGTGAGTGAACTCACGATTCTCTGTGGAATTCCCGCTTGTGCTATAATTTCAAATCCTTTTGATTCGAAAACCGAAGTGTGGCCAGATCTAGACGGAGCCAAACAGGTTATCGAAAGGTACCAGAGTTCGTCTGTGATCGATGGAACGAAGAATGTGAATCAAGAGAGTTTTCTTCTGCAGAGGATTACGAAAGCTAGGGAGCATCTTAAGAAGCTTAAGAATGAAAATCATGAGAAGGAGATGAATATTCGGATGATTGAATACATGAAGAAGAAAGATTTGCCCGATGATGTTAGCGTTTCGGATTTGAAAGAATTTGAAAAATTGGTTGAGAAAAATGTGAAAGAGATCGATAGTAAGATTGCACCCGGTTCATTAGATTAA 477 0.3983 MTRKKVKLAFISDDSARKATYKKRKKGILKKVSELTILCGIPACAIISNPFDSKTEVWPDLDGAKQVIERYQSSSVIDGTKNVNQESFLLQRITKAREHLKKLKNENHEKEMNIRMIEYMKKKDLPDDVSVSDLKEFEKLVEKNVKEIDSKIAPGSLD* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3600 158 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa6g3600 158 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Psa6g3600 158 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Psa6g3600 158 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Psa6g3600 158 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa6g3600 158 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa6g3600 158 Gene3D - 13 126 IPR036879 GO:0003677|GO:0046983
Psa6g3600 158 PANTHER MADS BOX PROTEIN 2 155 - -
Psa6g3600 158 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 155 - -
Psa6g3600 158 Coils Coil 86 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3600 Psa-Chr6 305190832 305191625 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3600 1 152 MADS-box Gene Family AT5G26630 46.405 2.05e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa6g3600 SRF-TF 1.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3600 - - gmx:100792290 209.92