Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3585 ATGGGAAGACACTCTTGCTGCTACAAGCAGAAGTTAAGGAAAGGACTTTGGTCTCCAGAAGAAGATGAGAAGCTTTTGAATTACATTACCAAACATGGTCATGGATGTTGGAGTTCAGTCCCAAAACTAGCTGGTTTGCAGAGGTGTGGGAAGAGTTGCAGGTTAAGATGGATAAACTACTTGAGACCTGATTTGAAGAGAGGAGCATTCTCACAACAAGAAGAGAATTTGATCATTGAGCTTCATGCAGTACTTGGAAACAGATGGTCTCAGATTGCAGCACAATTACCAGGAAGAACTGATAACGAGATTAAGAATCTATGGAACTCATGTCTCAAGAAAAGGTTGAGACAAAGTGGCATTGATCCAAACACTCATAAACCACTTTCTGAGATTGAAAATGACAATGAAAAAACACTCACAGCAAACAAAAGCAATCAAAAAGCTTCGGTTTCGTCGAATGAAGTTATGAGTTTGGTAATGGAACCTACAAAAGCTTCTATAGATGGTTACCCTCTAGAAGTTTCTACTTCCTCCAAGATCAACAACAATGGTAGCAGCAGCCATGAATTATTCCTAGACAGGTTCAACACCACAGGTTATTTTTCTTTCCAGAACATGAACTATGGATCAAACATCGGAATTTCCGAGAATCCAAATGCATCTATTTGTTTCACACCAACCTCATCTTCTTCGCAAATGATGTCAGATACAAATTCTGTTATAAACTCCAATATCCTCCATTCTGTTACAACCTCAATTTTCCAAACACCAACACAAGTGAAACCAACAGTTTCCGTTTCCTCCGACGGAGTTCATAACTGGGAAGCAAGTAACTATAACAGCATTAACAACGCAAGCAAAACCACCGGAAACGGCGCGAACTTTCTCGACAACGGAACTCTACCGCTACAAGAAGAAATGAAATGGTCTGAATATCTCAACACACCATTTCTTATGCAGAATCAACCTTCTCAATCTATCTACCCCGAGGCTAAACAAGAAACAGGTTTCATAACGGATGAATCATGTACTAGTTGGAACCAATGCCAACAGCAGCAACAACAACAACAACCAGGTTTTCAACTTTCTGATATATATAACAAGGATCTGCAGAGATTTTCAGTGGCTTTCGGACAAACTCTGTAG 1149 0.3986 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQSGIDPNTHKPLSEIENDNEKTLTANKSNQKASVSSNEVMSLVMEPTKASIDGYPLEVSTSSKINNNGSSSHELFLDRFNTTGYFSFQNMNYGSNIGISENPNASICFTPTSSSSQMMSDTNSVINSNILHSVTTSIFQTPTQVKPTVSVSSDGVHNWEASNYNSINNASKTTGNGANFLDNGTLPLQEEMKWSEYLNTPFLMQNQPSQSIYPEAKQETGFITDESCTSWNQCQQQQQQQQPGFQLSDIYNKDLQRFSVAFGQTL* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3585 382 Gene3D - 11 67 - -
Psa6g3585 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Psa6g3585 382 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Psa6g3585 382 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa6g3585 382 PANTHER HOMEODOMAIN-RELATED 305 375 - -
Psa6g3585 382 PANTHER HOMEODOMAIN-RELATED 1 293 - -
Psa6g3585 382 CDD SANT 17 61 IPR001005 -
Psa6g3585 382 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa6g3585 382 Gene3D - 68 150 - -
Psa6g3585 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Psa6g3585 382 PANTHER MYB DOMAIN PROTEIN 55 305 375 - -
Psa6g3585 382 PANTHER MYB DOMAIN PROTEIN 55 1 293 - -
Psa6g3585 382 MobiDBLite consensus disorder prediction 139 153 - -
Psa6g3585 382 MobiDBLite consensus disorder prediction 119 153 - -
Psa6g3585 382 SMART sant 66 114 IPR001005 -
Psa6g3585 382 SMART sant 13 63 IPR001005 -
Psa6g3585 382 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa6g3585 382 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Psa6g3585 382 CDD SANT 69 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3585 Psa-Chr6 303121267 303123318 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3585 1 382 MYB Transcription Factor Family AT1G09540 47.458 2.86e-114 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa6g3585 Myb_DNA-binding 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3585 K09422 - gmx:778072 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3585 6 303121267 303123318 Psa6g3585 6 303121267 303123318 ECH