Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3579 ATGCCTCTTTATGAGTTATACCGTTTGGCTAGAGAGAAGCTTGGGAATGAGACTAACACCACAAGTGTAGCTGATCAACCTTCCTCACCTGAGAATGATTTTTTTGAGCTGGTTTGGGAGAGTGGTCAGATTTCGAGCCAAGGTCAATCTAGTAGAGGTAGAAAGAGTAGTCCATCTTGCAGGAGTTTGCCATCTCACTGCTTACCGTCACATAGCCCGAGAGGTCGAGAGAAAGACGTTGGAGGAGGATATGGTAACAATCCGAAGATAGGAAAGTTTGGTGATTTAGAGTCTGGTTTGAATGAGATTCCGATATCGGTGCCATCTCGCGAAGTAGATGAAATGATGCCTTGGTTGGATTATTCAATGGATGGTTCTTTGCAAAATGAATATGGTTCTAATTTCTTACATGAACTACAGGTCACGGAGAACGACATCCCTGCATCGAATAACTTTACTCTATTCGATAAAAGGAGTAGTGGAAATCAGATATTTAGAGACTCAAATAAAAATTCTGCAGAACCGATGAATGTTTCTAAGGGTTCTTCGGCTGAACAGGTTGAGACTGCGAGAAATAAAGCTAGCACAAATCAGTTATATCCGCCGTCGTCGAATCAATGTCAAACATCATTTGTGACTGTTAGATCCAGGGATACGGATATAACTGAAAACAATAATGCAAGTAAAGGTAACCAGGATGTTCCTTATGGTGAAATTAGTCGCATTCCATCTTCCTCGAGTGATTTTTCTAGCTTAAAGGCGCAGAAGCAAGATCCTAAAATGTGTGGCAATAATGGTTCCAATGTAATGAATTTTTCCCATTTCGCAAGGCCTGCTGCTATTGTGAGAGCTAATCTTCAGAACATTGGATTGAAGTCTGGTTTGATTTCAGCTACAGCAAGACCAGATAGTATTGGAATTAAAAATAGAGGTGAAGCTTCAACTAGCAGCAATCCTCCTGAATCAACTCTTGTTAATTCAAGCGGTGAGTGTTCGAAGGAACCAGAAATTCGCTGTCAGAAGGCGGCGGTGCAATCCAAGGCTGATTTGAAACCTTTGCATCCGAAATCTCTTGAAACGAATGCTGTAGCTTCTAAACAATCTGAGCCTGTTTGCAAAGAGAGTGGAATTAAGAAAGATCAACCTTCCAATCAAGTTCTTGGCGACGGTGGCGCTAAAGTACAAACAGCTGCTGAGAAAGGTATGGAGGCGGCGGCAGTAGCTTCTTCTTCTGTTTGCTCTGGCAACGGTGCAGACAGAGCCTCGGATGATCCAAATCGAGATTTGAAACGAAAAAGTAGAGACACCGATGACTCTGAATGCCATAGTGAAGATGTTGAGGATGAATCAGTCGGTGTTAAGAAGGGAGGTTCCGGACGAGGAGTTGCAGGTTCCAAAAGAAGCCGTGCTGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACCGGATAAATGAGAAGATGCGTGCATTACAAGAACTCATACCTAACTGCAATAAGGTGGATAAAGCTTCTATGCTCGATGAGGCAATTGAGTATCTAAAAACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGTGCTGGTTTATATATGCCTCAAATGATGTTACCTCCTGGAATGCAGCACATGCATGCACCACACATGGCTGCTTTTTCGCCTATGAGCATTGGCATGCATATGGGGTTAGGTATGGGTTATGGAATGGGAATACCTGACATGAACGGCGGATCTTCTAGATTTCCAATGATGCCTCAGATGCAAGGAACTCATATCACTATGTCTGGACCTTCTGCCATACATGGGATGGCAAGATCGAATCCTCAAGGGTTTGGGCTACCAGGTCAGGGAGTTTCCATGCCAATGCCGCGAGCTCCTGTGTTTCCTTTTTCAGGAGGGCCTGTTTTGAACTCATCAGCTCCTGGACCATCTGCGTATGGATCCACAGGACCTGTTGAAACCGCGAATCCGGCTTCAGTGTCTGGCTCAAAAGATCCAATGCGGAATGTGGACTCTCAAATTAAACAAAACATAGGTGGCCGTGACCCTACAAACCAGATCCCTAATCAGTCGGCTTTGGCGCATACTGGTGGTCATCCCTCGGTGGCTGATGACAGTGGAGCTTCTAATCCTGGAAATATCACTTTGTGA 2154 0.4424 MPLYELYRLAREKLGNETNTTSVADQPSSPENDFFELVWESGQISSQGQSSRGRKSSPSCRSLPSHCLPSHSPRGREKDVGGGYGNNPKIGKFGDLESGLNEIPISVPSREVDEMMPWLDYSMDGSLQNEYGSNFLHELQVTENDIPASNNFTLFDKRSSGNQIFRDSNKNSAEPMNVSKGSSAEQVETARNKASTNQLYPPSSNQCQTSFVTVRSRDTDITENNNASKGNQDVPYGEISRIPSSSSDFSSLKAQKQDPKMCGNNGSNVMNFSHFARPAAIVRANLQNIGLKSGLISATARPDSIGIKNRGEASTSSNPPESTLVNSSGECSKEPEIRCQKAAVQSKADLKPLHPKSLETNAVASKQSEPVCKESGIKKDQPSNQVLGDGGAKVQTAAEKGMEAAAVASSSVCSGNGADRASDDPNRDLKRKSRDTDDSECHSEDVEDESVGVKKGGSGRGVAGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMPQMMLPPGMQHMHAPHMAAFSPMSIGMHMGLGMGYGMGIPDMNGGSSRFPMMPQMQGTHITMSGPSAIHGMARSNPQGFGLPGQGVSMPMPRAPVFPFSGGPVLNSSAPGPSAYGSTGPVETANPASVSGSKDPMRNVDSQIKQNIGGRDPTNQIPNQSALAHTGGHPSVADDSGASNPGNITL* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3579 717 MobiDBLite consensus disorder prediction 43 66 - -
Psa6g3579 717 MobiDBLite consensus disorder prediction 644 717 - -
Psa6g3579 717 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 469 518 IPR011598 GO:0046983
Psa6g3579 717 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 466 532 IPR036638 GO:0046983
Psa6g3579 717 MobiDBLite consensus disorder prediction 309 330 - -
Psa6g3579 717 MobiDBLite consensus disorder prediction 167 205 - -
Psa6g3579 717 MobiDBLite consensus disorder prediction 421 454 - -
Psa6g3579 717 MobiDBLite consensus disorder prediction 410 478 - -
Psa6g3579 717 MobiDBLite consensus disorder prediction 644 697 - -
Psa6g3579 717 SMART finulus 475 524 IPR011598 GO:0046983
Psa6g3579 717 Gene3D - 464 527 IPR036638 GO:0046983
Psa6g3579 717 MobiDBLite consensus disorder prediction 348 394 - -
Psa6g3579 717 CDD bHLH_AtPIF_like 469 531 - -
Psa6g3579 717 PANTHER TRANSCRIPTION FACTOR PIF3 1 688 - -
Psa6g3579 717 MobiDBLite consensus disorder prediction 308 332 - -
Psa6g3579 717 MobiDBLite consensus disorder prediction 43 85 - -
Psa6g3579 717 Pfam Helix-loop-helix DNA-binding domain 473 519 IPR011598 GO:0046983
Psa6g3579 717 PANTHER TRANSCRIPTION FACTOR PIF3 1 688 IPR044273 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3579 Psa-Chr6 301612496 301617401 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3579 1 589 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 35.537 1.47e-69 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa6g3579 HLH 7.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3579 K12126 - gmx:100794974 931.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3579 6 301612496 301617401 Psa6g3579 6 301612496 301617401 ECH