Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa6g3560 | ATGGCAACCAAACCCACAACCAGTTCATCCTCCGCCGCATCAACCTTTTTCAAGCCCGGATCCTTAGTTGAAATCAGCATCTACGAAAATGGATTCCGTGGTTCATGGTTCACCGGAAAGATTGTCCGTTGTCAAGGTGACGAGTTTGTTGTCGAGTATGAGAAAATAATGGCGGATGAGGAGGGAACAAAGGCCCTCCAAGAAACTGTTAAGGAATTCCAGCTCCGTCCGGTTCCCCCCAAGGAGATCAGCCGGGACTTCCAACCTGGTGATGAAGTTGAGGCTTATCACAACGACGGTTGGTGGGAGGGTTCCATCTGCGGATCATTAGAGGACGGTAAGAGTTACGTCTATTTCGGAAATACGACACAAGAGTATCCCGACGAACAACTGAGGCGCCACCATAAGTGGATCGGTGGAAGTTGGATCCCACCATTTCCACAACAGGATGAAAATGAAGTGAAGAAAACGGTGAGGGTGAAGGCTTCTGAAATTCTGAGTGGAGACAATGTGGAGTTGATGCTCAAACCAGGGACATTGGTTGAGGTCTGCAGTGACGAAGATGGTTTAAAAGGGGTTTGGTTTTCTGCAACCCTTGTTGAGCCTAAGGCGGGATGGAGGTTCGTGGTTGAGTACGATAGCCTGCTCGATGATAATTATTCAGACCTCTTGAGAGAGGAAATCAGTCTGCTTCAGATCAGGCCTCGTCCACCAAAAACTGATGATGTTGATCAGTTTAAGTTTCTTGATGAAGTGGATGCTTACTACAGAGACGGTTGGTGGGTTGGGGTTGTTTCGAAAGTTCTTGGAGACTCCAAATATGTTGTTTATTTCAGGAACTTCAATGAAGAAATGGAGTTTCAACATTCCCAGTTGAGGCTGCATCAGGATTGGGTGGATAACAAATGGGTAATGGCTTCTAAGGGGTTGAAGTTTTGA | 939 | 0.4675 | MATKPTTSSSSAASTFFKPGSLVEISIYENGFRGSWFTGKIVRCQGDEFVVEYEKIMADEEGTKALQETVKEFQLRPVPPKEISRDFQPGDEVEAYHNDGWWEGSICGSLEDGKSYVYFGNTTQEYPDEQLRRHHKWIGGSWIPPFPQQDENEVKKTVRVKASEILSGDNVELMLKPGTLVEVCSDEDGLKGVWFSATLVEPKAGWRFVVEYDSLLDDNYSDLLREEISLLQIRPRPPKTDDVDQFKFLDEVDAYYRDGWWVGVVSKVLGDSKYVVYFRNFNEEMEFQHSQLRLHQDWVDNKWVMASKGLKF* | 313 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa6g3560 | 312 | PANTHER | AGENET DOMAIN-CONTAINING PROTEIN-RELATED | 11 | 307 | - | - | |
| Psa6g3560 | 312 | Pfam | Agenet domain | 20 | 80 | IPR008395 | - | |
| Psa6g3560 | 312 | Pfam | Agenet domain | 250 | 304 | IPR008395 | - | |
| Psa6g3560 | 312 | Pfam | Agenet domain | 178 | 238 | IPR008395 | - | |
| Psa6g3560 | 312 | Pfam | Agenet domain | 90 | 148 | IPR008395 | - | |
| Psa6g3560 | 312 | Gene3D | - | 5 | 85 | - | - | |
| Psa6g3560 | 312 | SMART | agenet_At_2 | 85 | 139 | IPR014002 | - | |
| Psa6g3560 | 312 | SMART | agenet_At_2 | 15 | 83 | IPR014002 | - | |
| Psa6g3560 | 312 | SMART | agenet_At_2 | 244 | 300 | IPR014002 | - | |
| Psa6g3560 | 312 | SMART | agenet_At_2 | 173 | 241 | IPR014002 | - | |
| Psa6g3560 | 312 | PANTHER | AGENET-LIKE DOMAIN, AGENET DOMAIN, PLANT TYPE-RELATED | 11 | 307 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa6g3560 | Psa-Chr6 | 300326615 | 300328201 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa6g3560 | 185 | 298 | PHD Transcription Factor Family | AT5G58610 | 29.104 | 6.75e-09 | 55.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa6g3560 | - | - | aprc:113871596 | 319.316 |