Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3541 ATGCAGATCTTCGTCAAAACCCTGACGGGGAAAACCATCACCCTCGAGGTCGAGTCTTCCGACACCATCAACAATGTCAAAGCAAAGATCCAAGATAAGGAAGGAATCCCACCGGACCAACAACGACTGATCTTCACCGACACACAGCTAGAAGACGGCCGCACTCTTACTGACTACAACATCCAGAAGGAATCCACACTCCACCTTGTTCTCCGTCTCCGTGGTGGAGCCGAGAAGCGTAAGAAGAAGACCTACACCAAGCCGAAGAAGATTAAGCACAAGCATAGGAAGGTGAAGCTAGTTGTTCTTCAGTTTTACAAGGTCGCTCATTTTGGGGAAACTTTGAAGTTGATTAAGTTTAGTTAA 366 0.4699 MQIFVKTLTGKTITLEVESSDTINNVKAKIQDKEGIPPDQQRLIFTDTQLEDGRTLTDYNIQKESTLHLVLRLRGGAEKRKKKTYTKPKKIKHKHRKVKLVVLQFYKVAHFGETLKLIKFS* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3541 121 PANTHER UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1 1 119 - -
Psa6g3541 121 CDD Ubl_ubiquitin 1 76 - -
Psa6g3541 121 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Psa6g3541 121 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Psa6g3541 121 Gene3D - 1 80 - -
Psa6g3541 121 PANTHER UBIQUITIN 1 119 - -
Psa6g3541 121 Gene3D - 81 120 IPR038582 -
Psa6g3541 121 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
Psa6g3541 121 SMART ubq_7 1 72 IPR000626 GO:0005515
Psa6g3541 121 PRINTS Ubiquitin signature 11 31 IPR019956 -
Psa6g3541 121 PRINTS Ubiquitin signature 32 52 IPR019956 -
Psa6g3541 121 PRINTS Ubiquitin signature 53 74 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3541 Psa-Chr6 300029019 300029645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3541 1 119 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 85.714 2.01e-56 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3541 K02977 - psom:113276475 171.785