Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3539 ATGGCATCCAGTTCCAAAACACGCTCCTCCTCCCCAGCCTCATCCATCTTCAAACCTGGAACCTTAGTCGAAATCAGCTCCGATGACGACGGATTTCGTGGTTCATGGTTTACTGGAAAGATCGTCCGTCGTCTCGTCGGTGACAAGTTCATGGTCGAGTATGACAACTTAATGGCGGATGAAGACGACACCAAGCGCCTTAAAGAACCTATTAGACTTCGCCAGCTCCGCCCAATTCCCCCCAAGGAGATCACCCGGGACTTCAAATTCGGTGATGAAGTTGACGCTTATCACAATGACGGATGGTGGGAGGGTCATGTCACCGGAATATTAGAGGATGGTAGAAAGACAGTGTATTTCAGAGTATCGAGGGAGCAGCTGGAGTTCCCCAACGAGGAACTCAGGCTCCACCGTGAGTGGGTCAATGGAGGTTGGATCCCTCCATTTTCACAACAGGATGATAGCGAAATTAAGAAAAAAGTGTGTGTTAAGGCTGCTGAAACTGTGACCCTAGCCAGTGATGATTTCAAGTTTAAGGAAGGGGATTTGGTTGAGGTGTGCAGCGATGAAGATGGTTTCAAGGGGGCTTGGTTTTCTGCAACCCTTATTGAGGCTAAGGCAGGATGGAAGTTCGTCGTTGAGTATGAGAGCCTGCTCGATGATGATTCAAAGCTTTTGAGAGAGGAGGTCAGTATCCTGCAAATTAGGCCTCGTCCACCAAAAACTGATGATGTTGATCAGTTTAAGTTTCTTGATGAAGTGGATACCTATTACAATGATGGTTGGTGGGTTGGGATTGTTTCTAAAGTTCTCGGGGACTCCAAGTATATTGTATATTTCAGGAACTCTAATGAAGAACTGAAGTTTGAACATTCCCAGTTGAGGCTACATCAGGACTGGGTGGATAACAAATGGGTCATGGCTTCTAAGGCCTTGAAGTTTTGA 945 0.4667 MASSSKTRSSSPASSIFKPGTLVEISSDDDGFRGSWFTGKIVRRLVGDKFMVEYDNLMADEDDTKRLKEPIRLRQLRPIPPKEITRDFKFGDEVDAYHNDGWWEGHVTGILEDGRKTVYFRVSREQLEFPNEELRLHREWVNGGWIPPFSQQDDSEIKKKVCVKAAETVTLASDDFKFKEGDLVEVCSDEDGFKGAWFSATLIEAKAGWKFVVEYESLLDDDSKLLREEVSILQIRPRPPKTDDVDQFKFLDEVDTYYNDGWWVGIVSKVLGDSKYIVYFRNSNEELKFEHSQLRLHQDWVDNKWVMASKALKF* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3539 314 Pfam Agenet domain 252 306 IPR008395 -
Psa6g3539 314 Pfam Agenet domain 181 240 IPR008395 -
Psa6g3539 314 Pfam Agenet domain 20 81 IPR008395 -
Psa6g3539 314 Gene3D - 169 250 - -
Psa6g3539 314 PANTHER AGENET-LIKE DOMAIN, AGENET DOMAIN, PLANT TYPE-RELATED 12 309 - -
Psa6g3539 314 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 12 309 - -
Psa6g3539 314 SMART agenet_At_2 86 142 IPR014002 -
Psa6g3539 314 SMART agenet_At_2 246 302 IPR014002 -
Psa6g3539 314 SMART agenet_At_2 15 84 IPR014002 -
Psa6g3539 314 SMART agenet_At_2 176 243 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3539 Psa-Chr6 299871869 299874799 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3539 188 300 PHD Transcription Factor Family AT5G58610 29.851 3.58e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3539 - - aprc:113871596 402.905