Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3506 ATGGAAGGCAAGGAAGAAGTGAAGACGATGGTTTCATCACAACAACAACCAGATATCCAAGTCACCAATGTTGATGTTAAACACTACTCTTCTCCTGATGACTTAGAGACCTTTTACGTCAAACTCACTGACCTTCTGGACTCCTCTGGTTTCACTCTCATTTTGAATGTCCGAGACACAAGGTTAGACTTGTACCAGTTTTACTTGGAAGTCACCAAAAGAGGAGGTTATCACCAGGTTGGTAAAGAAAAGAAATGGGGTGAAATTGTGTCTGCTCTAAAACTGGAAGGAAACAATGCAAAATTATGTCTTCAACTTGAAAAGCTCTATGCAAATCTTCTTTACAAATTTGAGAAATTTTACTTCTATAGGTTTCCTGCTTCTCAAACTCCATCTGCCACCACCAAAGGTTCACCTAAAAGGAAACAGAGCTCAACCACTAGTTTATCCCAACTAATGGATGATGGAGATTATCCAACAGCGGCAAATATCTCCAAGGACTACCCTTTCAAAATGACAGCAATACCTGAAGTGCTCCTGCAAACACCATCAAAGGACAAAGAAAAGAAGAAAAATCGAGGTGTTCCAATAGGACGAAGTGGATATCAAATTTTCCTCAAGCAGGAATGTGCCCGATTAAAAGCTTCTCGTCAGGATATAGATGGAAAAACACTCATGCGCGTGGCTGTTGATGGATGGAATAACTTGTCAGACATTGATAAACAGCCATATTTGGAAGAAAGCAAGAAGATAAAGGAACAAAAGAAGGAAGCAATGATGAATGAATATAATAAACAGAAGAGCACTCAAGATCTTAACAAGGATGGAAAGAAGCCTAATCTGTGCAATGGTGACTACTACTGTGTAACTTTGCAACCTCAAGCAAATGACCCTCTCGTGAACAATGCAGCAGTGGACCTGGCTTCTAAAATGACAGAAAAGACATCTAAGGATCCCTTCTTCCCATTTGATTTGGATGCTTATCGTTCAGTAGATTTGCTAACTGGATAG 1011 0.3986 MEGKEEVKTMVSSQQQPDIQVTNVDVKHYSSPDDLETFYVKLTDLLDSSGFTLILNVRDTRLDLYQFYLEVTKRGGYHQVGKEKKWGEIVSALKLEGNNAKLCLQLEKLYANLLYKFEKFYFYRFPASQTPSATTKGSPKRKQSSTTSLSQLMDDGDYPTAANISKDYPFKMTAIPEVLLQTPSKDKEKKKNRGVPIGRSGYQIFLKQECARLKASRQDIDGKTLMRVAVDGWNNLSDIDKQPYLEESKKIKEQKKEAMMNEYNKQKSTQDLNKDGKKPNLCNGDYYCVTLQPQANDPLVNNAAVDLASKMTEKTSKDPFFPFDLDAYRSVDLLTG* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3506 336 SMART bright_3 33 123 IPR001606 GO:0003677
Psa6g3506 336 Pfam HMG-box domain 199 261 IPR009071 -
Psa6g3506 336 Pfam ARID/BRIGHT DNA binding domain 36 118 IPR001606 GO:0003677
Psa6g3506 336 SUPERFAMILY HMG-box 181 259 IPR036910 -
Psa6g3506 336 SUPERFAMILY ARID-like 29 123 IPR036431 GO:0003677
Psa6g3506 336 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 1 326 - -
Psa6g3506 336 SMART hmgende2 194 264 IPR009071 -
Psa6g3506 336 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 195 264 IPR009071 -
Psa6g3506 336 Gene3D - 12 143 IPR036431 GO:0003677
Psa6g3506 336 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 1 326 - -
Psa6g3506 336 ProSiteProfiles ARID domain profile. 32 122 IPR001606 GO:0003677
Psa6g3506 336 SMART ARID_2 29 118 - -
Psa6g3506 336 MobiDBLite consensus disorder prediction 132 152 - -
Psa6g3506 336 Gene3D High mobility group box domain 196 281 IPR036910 -
Psa6g3506 336 CDD HMGB-UBF_HMG-box 199 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3506 Psa-Chr6 297244023 297246994 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3506 38 260 ARID Transcription Factor Family AT3G13350 24.031 2.37e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Psa6g3506 ARID 5.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3506 - - mtr:MTR_5g095070 320.087