Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3505 ATGCTCTCCTTTTCAACAATGCACACTCAAACAGCACAGAAAAAGCAAGTGAGTCTAGTTGGTTTCTATAGCTCAAACATGGAAGGCGAGGAAGAAGTGGTGAAGACGATGGTTTCATCATCACAACCAGAACCAGATATCCAACTCACCAATGTTGATGTGAAACAGTACTCTTCACCTGATGACTTAGAGAGCTTCTACGTCAAACTCACTGACCTGTTGGACTCCTCTGGATACACTCTCATTTTGAATGTCCGAGAAACAAGGTTAGACTTGTATCTGTTTTACATGGAGGTCACCAAAAGAGGAGGTTATCACCAGGTTGGTAAGCAAAAGAAATGGGGTGAAATAGTTTCAGCACTAAAGCTGGAAGGAAACAATGCAAGGTTATGTACTCAAGTTCAAAAGCTCTATGCAAAGCTTCTATACAAATTTGAGAAACTTTACTTCTACAGGTTACCTGCTTCTCAAACTCCAACTGCTAGAACCAAAGGTTCAGGTAAAAGGAAGCATGGCTCAACCACAAGTTTATCCCAATTAATGGATCATGGAGATTATCCGACGGCGGCAGAGATATCTAAGGACTGCCCTATCAAAGTGACAGCAATACCTGAAGTGCTCCTACAAACACCATCAAAGGACAAAGAAAAGAAGAAGAAGCGAGGTGCTCCAACGGGACGAAGTGGATATCAAATTTTCCTCAAGCAAGAATGTGCCCGATTAAAAGTTTTTCGTCAGGACATAGATGGCAAAGCTATCCTGCGCATGGCTGTCGATGAATGGAATAAGTTGTCAGACATTGATAAACAGCCATATTTGGAAGAAAGCAAGAAGATAAAGGAACAAAAGAAGGAAGCAATGATGAATGAAAATAATAAACAGAAGAGCACTCAAGATCTTAACAAGGATGAAAAGAAGCTTAATGTGTGTAGTGGTGACTACTACTGTGTAACTTTGCAACCTCAAGCAAATGATCCTCTGGTGAACAATGCAGCAGTGGACTTGGCTTCTAAAATGACAGAAAAAACATCCAAGGATCCCTTCTTCCCATTTGATTTGGATGCTTATCGTTCTGTCGATTTGCTAACTGGATTAGCAATCGGAGAACCCAAATAA 1116 0.4086 MLSFSTMHTQTAQKKQVSLVGFYSSNMEGEEEVVKTMVSSSQPEPDIQLTNVDVKQYSSPDDLESFYVKLTDLLDSSGYTLILNVRETRLDLYLFYMEVTKRGGYHQVGKQKKWGEIVSALKLEGNNARLCTQVQKLYAKLLYKFEKLYFYRLPASQTPTARTKGSGKRKHGSTTSLSQLMDHGDYPTAAEISKDCPIKVTAIPEVLLQTPSKDKEKKKKRGAPTGRSGYQIFLKQECARLKVFRQDIDGKAILRMAVDEWNKLSDIDKQPYLEESKKIKEQKKEAMMNENNKQKSTQDLNKDEKKLNVCSGDYYCVTLQPQANDPLVNNAAVDLASKMTEKTSKDPFFPFDLDAYRSVDLLTGLAIGEPK* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3505 371 SMART ARID_2 57 146 - -
Psa6g3505 371 ProSiteProfiles ARID domain profile. 60 150 IPR001606 GO:0003677
Psa6g3505 371 SUPERFAMILY ARID-like 57 151 IPR036431 GO:0003677
Psa6g3505 371 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 223 291 IPR009071 -
Psa6g3505 371 Pfam HMG-box domain 227 289 IPR009071 -
Psa6g3505 371 SMART bright_3 61 151 IPR001606 GO:0003677
Psa6g3505 371 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 27 354 - -
Psa6g3505 371 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 27 354 - -
Psa6g3505 371 Gene3D High mobility group box domain 209 312 IPR036910 -
Psa6g3505 371 Gene3D - 45 170 IPR036431 GO:0003677
Psa6g3505 371 SUPERFAMILY HMG-box 211 287 IPR036910 -
Psa6g3505 371 Coils Coil 273 293 - -
Psa6g3505 371 CDD HMG-box 227 287 - -
Psa6g3505 371 Pfam ARID/BRIGHT DNA binding domain 64 146 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3505 Psa-Chr6 297230351 297232159 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3505 64 278 ARID Transcription Factor Family AT1G55650 25.417 4.70e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Psa6g3505 ARID 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3505 - - mtr:MTR_5g095070 317.775