Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa6g3495 | ATGTCGTATCGTCCAACTGCAAACTCCAGGACCGAGGTCCGTCGCAATCGATACAAAGTCGCCGTCGATGCCGAAGAAGGCCGCCGACGCCGTGAGGACACCATGGTTGAGATCCGTAAGAATCGTAGAGAAGAGAGTTTGCTCAAAAAGAGGCGCGAGGGTCTTCAACCTCAGCAGATTCCTTCTTCCATTCACTCCGTTGTAGAGAAGAAGTTGGAAAATTTACCATCCATGGTTACTGGTGTTTGGAGTGATGATAATAATTTGCAGCTTGAGGCAACGACTCAGTTTCGAAAGCTGCTTTCTATTGAGCGTACTCCACCGATAGAGGAGGTTATACAGACTGGTGTTGTTTCTCGTTTTGTTGAGTTTCTGATGAGGGAAGATTTCCCACAATTGCAGTTTGAGGCTGCTTGGGCTTTGACAAATATAGCTTCTGGAACGTCGGAAAACACCAAAGTGGTAATTGACCACGGTGCTGTCCCGATTTTTGTGAAGCTACTTGCTTCTTCTAGTGATGATGTCCGTGAACAGGCAGTGTGGGCATTAGGAAATGTTGCTGGGGATTCTCCTAGATGTCGTGATCTTGTTCTCGGCCAGGGGGCTTTGGTTCCTCTTTTGGCACAATTGAATGAACATGCCAAGCTTTCTATGCTGAGAAATGCTACTTGGACACTTTCAAACTTTTGCAGGGGCAAGCCACAGCCCCCTTTTGATCAGGTTAAACCTGCACTTCCTGCTCTTGCTGGTCTAATTCATTCAAATGATGAAGAAGTTTTGACTGATGCCTGCTGGGCACTTTCATATCTTTCTGACGGTACAAATGATAAAATTCAAGCTGTAATTGAAGCTGGTGTTTGTCCCCGACTTGTGGAGCTTCTACTGCATCCATCTCCTTCAGTGCTGATTCCTGCTCTTCGCACTGTTGGAAACATAGTCACTGGAGATGATATGCAAACTCAGGTTATCATCAATCATCAGTCTCTTCCTTGCTTATTCAATCTGTTGACAAATAATTATAAAAAAAGCATCAAGAAGGAAGCTTGTTGGACCATATCAAACATTACAGCTGGGAATAAACATCAGATTCAGGCTGTGATTGAGGCCAATATATTTGGTCCTTTGGTGACCCTGCTTCAAAATGCTGAGTTCGATATTAAGAAAGAGGCTGCATGGGCTATCTCAAATGCTACATCTGGTGGATCTCATGAACAAATCAAGTACCTAGTAGAACAAGGGTGTATTAAGCCCTTGTGCGATCTTCTTATCTGTCCCGATCCTAGGATTGTGACAGTTTGTCTGGAAGGCCTTGAAAACATCTTGAAGGTTGGAGAAGCTGATAAAAATATAGGCAACACTGGTGACGTGAATCTATATGCCCAATTGATTGATGATGCTGAGGGGTTGGAGAAAATTGAAAACCTCCAGAGTCACGACAACACTGAGATTTATGAGAAGGCTGTGAAGCTTCTCGAGACCTACTGGTTGGAGGAAGAAGATGAGACTATGCCTCCAGGGGATGCTTCTCAAGCAGGATTCAACTTTGGTAGCACTGATGCTCCTTCTGTGCCTTCTGGAGGGTTCAACTTCAATCAGTAG | 1599 | 0.4465 | MSYRPTANSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLLKKRREGLQPQQIPSSIHSVVEKKLENLPSMVTGVWSDDNNLQLEATTQFRKLLSIERTPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASSSDDVREQAVWALGNVAGDSPRCRDLVLGQGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALAGLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQSLPCLFNLLTNNYKKSIKKEACWTISNITAGNKHQIQAVIEANIFGPLVTLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVEQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQLIDDAEGLEKIENLQSHDNTEIYEKAVKLLETYWLEEEDETMPPGDASQAGFNFGSTDAPSVPSGGFNFNQ* | 533 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa6g3495 | 532 | Gene3D | - | 13 | 52 | IPR036975 | GO:0006606 | |
| Psa6g3495 | 532 | SMART | arm_5 | 274 | 314 | IPR000225 | GO:0005515 | |
| Psa6g3495 | 532 | SMART | arm_5 | 359 | 399 | IPR000225 | GO:0005515 | |
| Psa6g3495 | 532 | SMART | arm_5 | 402 | 442 | IPR000225 | GO:0005515 | |
| Psa6g3495 | 532 | SMART | arm_5 | 316 | 357 | IPR000225 | GO:0005515 | |
| Psa6g3495 | 532 | SMART | arm_5 | 105 | 146 | IPR000225 | GO:0005515 | |
| Psa6g3495 | 532 | SMART | arm_5 | 233 | 272 | IPR000225 | GO:0005515 | |
| Psa6g3495 | 532 | SMART | arm_5 | 148 | 188 | IPR000225 | GO:0005515 | |
| Psa6g3495 | 532 | SMART | arm_5 | 189 | 231 | IPR000225 | GO:0005515 | |
| Psa6g3495 | 532 | Pfam | Importin beta binding domain | 14 | 95 | IPR002652 | GO:0006606|GO:0061608 | |
| Psa6g3495 | 532 | Gene3D | - | 73 | 496 | IPR011989 | - | |
| Psa6g3495 | 532 | PANTHER | IMPORTIN SUBUNIT ALPHA | 3 | 521 | - | - | |
| Psa6g3495 | 532 | ProSiteProfiles | IBB domain profile. | 1 | 60 | IPR002652 | GO:0006606|GO:0061608 | |
| Psa6g3495 | 532 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 159 | 201 | IPR000225 | GO:0005515 | |
| Psa6g3495 | 532 | PANTHER | IMPORTIN ALPHA | 3 | 521 | - | - | |
| Psa6g3495 | 532 | SUPERFAMILY | ARM repeat | 14 | 500 | IPR016024 | - | |
| Psa6g3495 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 190 | 231 | IPR000225 | GO:0005515 | |
| Psa6g3495 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 244 | 271 | IPR000225 | GO:0005515 | |
| Psa6g3495 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 275 | 313 | IPR000225 | GO:0005515 | |
| Psa6g3495 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 403 | 440 | IPR000225 | GO:0005515 | |
| Psa6g3495 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 359 | 398 | IPR000225 | GO:0005515 | |
| Psa6g3495 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 317 | 357 | IPR000225 | GO:0005515 | |
| Psa6g3495 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 107 | 146 | IPR000225 | GO:0005515 | |
| Psa6g3495 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 148 | 187 | IPR000225 | GO:0005515 | |
| Psa6g3495 | 532 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 243 | 285 | IPR000225 | GO:0005515 | |
| Psa6g3495 | 532 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 116 | 159 | IPR000225 | GO:0005515 | |
| Psa6g3495 | 532 | PIRSF | Importin_alpha | 5 | 530 | IPR024931 | GO:0005737|GO:0006606|GO:0061608 | |
| Psa6g3495 | 532 | Pfam | Atypical Arm repeat | 457 | 503 | IPR032413 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa6g3495 | Psa-Chr6 | 296246122 | 296251328 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa6g3495 | 152 | 421 | U-box Gene Family | AT1G23030 | 22.963 | 9.05e-06 | 46.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa6g3495 | K15042 | - | gmx:100789135 | 996.882 |