Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3494 ATGGCGACACGGAATCGCACTTTGCTTTTCCGAAAGTACAGAGACGCATTGAAGAGTGTTCGTGCTCCGTCAATCTCTTCGCCGCCGTCCACATCTTCCGGCAACGGTCCCGTCATTGAATTGGTCAGCACCTCGCTTCTCAATCCGAATCGATCTTATGCTCCGCTTAGTACAGAAGATCCCGGTAGTTCGAGTAAGGGTCTAAATCCAATTGCTGTTGGGCTACCTCCAGCATGGGTGGATGTATCTGAAGAAATATCAGCAAATGTGCAACGTGCCCGCAAAAAAATGGCAGAGTTGTCCAAGGCTCATGCGAAGGCCTTAATGCCATCGTTTGGAGATGGTAAGGATGACCAACATGCTATTGAGTCTCTAACACACGAGGTAACTGACTTGATAAAGAGATCAGAGAAGAGACTGCGGAGACTTGCTGCTGCAGGGCCTTCTGAGGATTCTAATGTCAGAAAAAATGTGCAGCGTTCTCTTGCTACTGGCCTTCAAAGCCTCTCTGTAGAGCTTCGCAAGAAACAATCAACTTATTTGAAGCGCCTCAGACAGCAAAAAGAGGGTCAAGATGGAGTTGACCTAGAGATCAACATAAATGGAAGTAAATCTAGATTTGAAGACGATGACTTGGACAATATGATATTTAACGAGCATCAGATGGCGAAGCTAAAAAAGAGTGAAGCTTTCACAGTTGAAAGAGAAAAAGAGATCGAACAGGTTGTGGAATCTGTTAATGAGCTTGCTCAGATTATGAAGGATTTATCAGTACTAGTCATAGACCAGGGAACCATTGTTGATAGAATAGACTACAACATTCAGAATGTGGCAACTACAGTTGAGGATGGCCTTAAACAGCTGCAGAAGGCAGAGAGAACTCAGAAAAAGGGGGGCATGGTAATGTGTGCGACGGTTCTTCTTATCATGTGCTTTGTTATGTTGGTTCTCTTGGTTATTAAGGAAATTATTTTGTGA 978 0.4417 MATRNRTLLFRKYRDALKSVRAPSISSPPSTSSGNGPVIELVSTSLLNPNRSYAPLSTEDPGSSSKGLNPIAVGLPPAWVDVSEEISANVQRARKKMAELSKAHAKALMPSFGDGKDDQHAIESLTHEVTDLIKRSEKRLRRLAAAGPSEDSNVRKNVQRSLATGLQSLSVELRKKQSTYLKRLRQQKEGQDGVDLEININGSKSRFEDDDLDNMIFNEHQMAKLKKSEAFTVEREKEIEQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCATVLLIMCFVMLVLLVIKEIIL* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3494 325 CDD SNARE_syntaxin16 234 290 - -
Psa6g3494 325 Coils Coil 83 103 - -
Psa6g3494 325 ProSitePatterns Syntaxin / epimorphin family signature. 235 274 IPR006012 GO:0005484|GO:0006886|GO:0016020
Psa6g3494 325 Gene3D - 76 283 - -
Psa6g3494 325 SMART SynN_4 70 185 IPR006011 GO:0016020
Psa6g3494 325 PANTHER SYNTAXIN 1 320 IPR045242 -
Psa6g3494 325 SMART tSNARE_6 224 291 IPR000727 -
Psa6g3494 325 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 229 291 IPR000727 -
Psa6g3494 325 Pfam SNARE domain 265 317 IPR000727 -
Psa6g3494 325 PANTHER TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 320 - -
Psa6g3494 325 SUPERFAMILY t-snare proteins 75 284 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3494 Psa-Chr6 296230343 296237604 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3494 1 325 SNARE and Associated Proteins AT5G26980 77.370 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3494 K08489 - gmx:100796741 554.673