Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3477 ATGTCGTCTGAGCCGTTGATCCAACCGTCCGATCGAGTGTCATCCTCCCAGCAATGCGGTGAACCTCCGAGGATTTTCGACGAACTTCCCAAAGCCAGTATCGTTTCCGTTTCGCGGCCGGAGACCGGTGAAATAAGTCCGATTCTCCTTTCTTATACAATTGAGTTGCAGTATAAACAGTTCAAGTGGCGATTAAGGAAGAAAGCATCACAAGTTCTCTATTTACAGTTTGCATTGCGGAAACGTGCAATAATTGAAGAATTTCATGACAAGCAAGAGCAGGTAAAAGAATGGCTTCATAGCTTAGGAATAGTAGATCAAACGGTAATGGTGCAAGATGATGAAGAACCTGATGATGGTGCTGTACCAATACATCATGAAGACAGTGTTAAAAATAGATATGTCCCATCAGTTGCTGCCCTATCAATAATTCGTCCGTCACTAGGGGGCCAGCAGTCGGTTGCAGACAGAGCCAAAGTTACAATGCAGAAGTATTTGGATCTCTTTTTAGGAAACCTAGAGATTGTCAATTCTCGAGAGGTCTGCAAGTTTTTGGAGGTCTCCAAGCTATCTTTTTTACAAGAGTATGGTCCAAAGCTGAGAGAGGGATATGTAACGGTGAAGCATTTGTTAAATCTTTCTCAGGATGCAAATATAACTTGCTTTCCATGTCACTGGTTTCACTTTTGTGATAACAATTGGAAGAAGGTATGGGCTGTTTTGAAACCTGGGTTTTTGGCCTTGCTGGATGATCCCTTCAACAACAGGCCACTGGATATAATTACGTTTGATGTCCTTCCATCCTCGCCCGGAAAAGGAGAGACCAAAATATATTTAGCCGAACCTATAAAGGAACGCAATCCTCTGCGTTACACATTTAAGGTTACTAGTGGAAACAGAAGTATATGCTTGAGAACTATCAGCAGTGCTAAAGTTCAAACTTGGGTTACTGCGATTAATGAAGCTGGTCTAAGGCCTATGGAGGGTTGGTGTTGTCCTCATCGCTTTGGTTCATTTGCTCCCATAAGAGGTTTGACTGTAGATGGGAGCCAAGCCCAATGGTTTGTAGATGGAGAAGCAGCATTTGAAGCAATTGCTTCTTCTATTCAAGATGCAAAATCAGAGATCTTCATAACAGGTTGGTGGCTGTGCCCAGAGCTATACCTGAGGAGGCCTTTTGATAGTTTTCCTACCTTTAGGTTAGACTCTTTATTGGAAGAAAAAGCTAAACAAGGGGTTCAGATCTATGTGCTTCTTTACAAGGAGGTTTCTATAGCTTTGAAAATCAACAGCTTGTACAGTATGAGAAGACTGCTAAAAATTCATGAAAATGTGAGGGTATTACGCTATCCCGACCATTTTGCTTCTGGTGTGTATTTATGGTCGCACCATGAAAAGCTTGTAATTATTGATTACAAGGTTTGCTTTCTTGGAGGATTAGATTTAAGCTTTGGACGATATGACACACCTGAACACAGAGTGGGTGATAGCCCCTCTGTAATATGGCCCGGAAAGGACTATTACAATCCAAGGGAATCTGAACCAAACTCATGGGAAGACACCATGACAGATGAATTCGATCGCCAAAAATATCCACGTATGCCATGGCATGATGTTCATTGTGCTCTCTGGGGACCTCCCTGCCGTGACATTGCTCGGCACTTTGTTCAACGTTGGAATCATGCTAAGAGAACTAAAGCTCCAAATGAACATGAAATTCCTTTACTTATGCCTCACCATCACATGGTCATCCCACATTACATGGGAAGAAGCAAAGAGATTGACATTGATGACGAGAAAGATGAAGACAACAAGAAAAAAATTGACAGGCATGATTCATTTTCCTCACAATCTCCATTGCAAGACATACCGTTACTTTTACCTCAAGAAGCTGATGGAGCAGTTACTTCAAATGGAGATCATAGAAATTTCAGTGAAAGTTCTCCATTATTGTCCCAAAATCTGGAAGGTGAAACTTTAGTTTCAGATAACGAGAAGAAAGGCTTTCAAGATGAAGTTGTTCCTTTTAACTTTGGGCCTCAATGCACTGTTGATGCTATAGATGGTTGGTGGGAAACACCAAAAGGTACCAATGATGCCACTACTTTGGAATATGGACAAGTTGGCCCACGTACTACTTGTCACTGTCAGGTAATCAGAAGTGTAAGCCAGTGGTCTGTTGGAACAAGTCAACCTGAAGAAAGCATTCACACTGCATATTGTTCTCTTATTGAAAAGGCAAAGCATTTTATCTACATTGAGAACCAATTTTTTATATCAGGTCTAGCAATGGATGACACGATACAAAACCGTATTTTGGAAGCAATATACAGGCGTATTTTGCAAGCTCACAAAGAACATGAAGATTTTAGAGTTATAATTGTGATGCCCCTCTTGCCTGGCTTTCAGGGTGGTCTGGATGATAGTGGTGCTGCAACTGTGAGAGCCTTGACACATTGGCAGTACAGGACAATTTCTAGAGAAAAGCACTCCATATTACACAATCTTGAAGCTATACTTGGTCGAAAGGCACATGATTATATTTCCTTTTATGGTCTAAGATCTCATGGTAGGCTTTATCCAGATGGTCCTATGGCTACAAGTCAGGTATATGTGCACAGTAAGTTGATGATAATTGATGACCGTATAGCTTTGATTGGATCATCTAATATAAATGACCGGAGTTTGCTTGGATCAAGAGATTCTGAGATTGGAGTGGTTATAGAGGACAAAGAATATGTTGAATCATTGATGAATGGAAAGCCATGGAAGGCTGGTAAATTTTCCTATAGCCTCCGCTGTTCCCTATGGTCTGAACATCTTGGTCTTCATACCGGAGAGATTAATAAAATCAATGATCCAGTGGCAGATTCAACTTACAAGGATTTGTGGTCAGCAACTGCAAAGGAAAATACAAGAATATACCATGAAGTCTTTTCTTGCATTCCCAATGATCAGATACACTCAAGAGCCACACTTCGGCAAAGCATGGTCCACTGGAAGGAAAAACTTGGCCAAACCACCATTGATTTGGGAATATCCCCTGACAAGTTAATCTGTCACGAGAATGGAGAAAGAAAAACAATAGACCCGATAGATAGATTGAAGTGTATAAAGGGACATCTTGTTTCCTTTCCTTTGGATTTCATGTGTGAGGAAGATTTAAGACCAGCTGTTATTGAAAGTGAGTTTTATGTATCGCCTCAAGTATATCATTAA 3219 0.4094 MSSEPLIQPSDRVSSSQQCGEPPRIFDELPKASIVSVSRPETGEISPILLSYTIELQYKQFKWRLRKKASQVLYLQFALRKRAIIEEFHDKQEQVKEWLHSLGIVDQTVMVQDDEEPDDGAVPIHHEDSVKNRYVPSVAALSIIRPSLGGQQSVADRAKVTMQKYLDLFLGNLEIVNSREVCKFLEVSKLSFLQEYGPKLREGYVTVKHLLNLSQDANITCFPCHWFHFCDNNWKKVWAVLKPGFLALLDDPFNNRPLDIITFDVLPSSPGKGETKIYLAEPIKERNPLRYTFKVTSGNRSICLRTISSAKVQTWVTAINEAGLRPMEGWCCPHRFGSFAPIRGLTVDGSQAQWFVDGEAAFEAIASSIQDAKSEIFITGWWLCPELYLRRPFDSFPTFRLDSLLEEKAKQGVQIYVLLYKEVSIALKINSLYSMRRLLKIHENVRVLRYPDHFASGVYLWSHHEKLVIIDYKVCFLGGLDLSFGRYDTPEHRVGDSPSVIWPGKDYYNPRESEPNSWEDTMTDEFDRQKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRTKAPNEHEIPLLMPHHHMVIPHYMGRSKEIDIDDEKDEDNKKKIDRHDSFSSQSPLQDIPLLLPQEADGAVTSNGDHRNFSESSPLLSQNLEGETLVSDNEKKGFQDEVVPFNFGPQCTVDAIDGWWETPKGTNDATTLEYGQVGPRTTCHCQVIRSVSQWSVGTSQPEESIHTAYCSLIEKAKHFIYIENQFFISGLAMDDTIQNRILEAIYRRILQAHKEHEDFRVIIVMPLLPGFQGGLDDSGAATVRALTHWQYRTISREKHSILHNLEAILGRKAHDYISFYGLRSHGRLYPDGPMATSQVYVHSKLMIIDDRIALIGSSNINDRSLLGSRDSEIGVVIEDKEYVESLMNGKPWKAGKFSYSLRCSLWSEHLGLHTGEINKINDPVADSTYKDLWSATAKENTRIYHEVFSCIPNDQIHSRATLRQSMVHWKEKLGQTTIDLGISPDKLICHENGERKTIDPIDRLKCIKGHLVSFPLDFMCEEDLRPAVIESEFYVSPQVYH* 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3477 1072 Gene3D - 200 325 IPR011993 -
Psa6g3477 1072 Gene3D Endonuclease Chain A 691 931 - -
Psa6g3477 1072 SUPERFAMILY PH domain-like 231 322 - -
Psa6g3477 1072 Pfam PLD-like domain 741 915 IPR025202 -
Psa6g3477 1072 SMART pld_4 459 486 IPR001736 GO:0003824
Psa6g3477 1072 SMART pld_4 868 895 IPR001736 GO:0003824
Psa6g3477 1072 SUPERFAMILY Phospholipase D/nuclease 322 579 - -
Psa6g3477 1072 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 868 895 IPR001736 GO:0003824
Psa6g3477 1072 ProSiteProfiles PH domain profile. 198 324 IPR001849 -
Psa6g3477 1072 PANTHER PHOSPHOLIPASE D ZETA 2 16 1069 - -
Psa6g3477 1072 Gene3D Endonuclease Chain A 346 582 - -
Psa6g3477 1072 SMART PH_update 199 326 IPR001849 -
Psa6g3477 1072 PANTHER PHOSPHOLIPASE D 16 1069 IPR015679 -
Psa6g3477 1072 PIRSF PLD_euk 33 593 IPR016555 GO:0004630|GO:0006654|GO:0048017
Psa6g3477 1072 PIRSF PLD_euk 580 1072 IPR016555 GO:0004630|GO:0006654|GO:0048017
Psa6g3477 1072 CDD PH_PLD 176 322 - -
Psa6g3477 1072 CDD PLDc_vPLD1_2_yPLD_like_2 728 912 - -
Psa6g3477 1072 MobiDBLite consensus disorder prediction 599 621 - -
Psa6g3477 1072 MobiDBLite consensus disorder prediction 1 21 - -
Psa6g3477 1072 SUPERFAMILY Phospholipase D/nuclease 707 918 - -
Psa6g3477 1072 CDD PLDc_vPLD1_2_yPLD_like_1 352 496 - -
Psa6g3477 1072 Pfam Phospholipase D Active site motif 459 486 IPR001736 GO:0003824
Psa6g3477 1072 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 459 486 IPR001736 GO:0003824
Psa6g3477 1072 MobiDBLite consensus disorder prediction 599 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3477 Psa-Chr6 295684344 295695383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3477 24 1072 Phospholipase D Gene Family (Wang group) AT3G05630 66.919 0.0 1422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3477 K01115 - gmx:100796914 1894.78