Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3468 ATGAGTGAGGAAGATACAAAAAGAAAGAAGAGAATCGTTCTAATATGCACCTCAAGCTTTTTACTAGTGGCTATGGTGGTTGCTGTGACCATTGGTGTTAATAATAATGAAGTTATCACGGATAGCAGTCGTATGGCTTCAACCCAGAAAGCCGTGAAAACCTTTTGTAGTCCGACAAGTTTTAAAAAAGACTGCGAGGAAAGTCTATTGTCAGAAGTAGGCAGCACGACAGACTCAAGAGAGCTCATGAAATTCGCTTTCAATATCACCGTTGCGAAGATCAGTAAAGGACTCCAGAAAACACATCTCTTGCAGCAGGTTGAGAAAGAACCTAGGGCGAGTATGGCACTTAGCACATGCAAGAAGTTAATGAATCTTTCTATCGGAGAATTCCACAGGTCACTTGACGGAATAGCAAGTTTTAATCTCAACAATCTAGAAAGCATTCTTGTGAGTTTAAGAGTTTGGTTAACAGGTGCAATGACATATCAAGAAACATGTTTAGATGGTTTTGCAAACATCACCAGTGAATCTGGTACCAAGATGAAACACATTTTAAAATATTCGAGGCGTATGAGTAGTAATGCACTTGATGTCGTTACGGATTTGCAAAACGCAGTGAAGGATATTAATGCAACAAGAGATGACCGTCGTCTTATGGATGATTATAAAGGTTCTTTTGTTGGCGAACAAGTTGGTGCTCATGATGATGTGAATGAGGTTCCTTCTTGGGTAGGTGATGGTTCGAGTGCTGGTGTTCGAAGACTCCTTCAAGTGGCTCAAAATAAACTCAAGGCTAATGTCATTGTGGCTCAAGATGGTAGTGGACAGTTTAGGACTATCAATGAAGCTTTGAAGCTTGTGCCAATCAATGGCCAAAAACCTTTTGTTATTTATATCAAGCAAGGTATTTATCATGAGTATGTTGACATTACCATAGTAATGACTAATGTTGTGATGGTTGGTGATGGTGATAGGAAAACAATAATTACTGGCAACAAAAACATGGTAGATGGAATTGCAACTTATATAACCCCCACTCTCGCTGTTGGGGCAGATTATTTTATTGCGATGAGCATAGGAGTTGAGAATTCAGCAGGACCCCAAAAGGGACAAGCTGTAGCCTTAAGAGTCCAAGGCGACAAGACAATTTTTTACCAATGTACAATAGACGGATATCAAGACACACTATATGCACACACTATGCGTCAATTTTATCGCGATTGTACGGTTTCAGGCACGATTGACTTTGTGTTTGGCAACGCGCAAGCCGTTTTCCAGAACTGCACATTTGTAATTAGAAAACCATTAGATAACCAACAATGCATTATAGTTGCACAAGGCAGAGCAGAGGAAAACCAACCATCAGGATTTGTAATTCAAAATAGCCGCATTGTTGCTGATCATCCGGAAGCTCCAGTGACCTTCAAAGCTTATATCGGTCGTCCGTGGAAGCACTACGCGAGGACTATTGTCATGGATACTTACATAGATTCGGTGATTCAGCCTGACGGGTTTATGCCATGGGAAGAACCGGATAAAACACTTACTGGCATGGACACTTGTTTTTATGCTGAGGTTAATAATACTGGTCCTGGTTCTGATAAATCAAAGCGCGTAAAATGGCTTGGGGTTAAGAACCTTACACCAGAATCTGCACATATTTTCTATCCATCTTTGTTCTTTCAGGGAGATGAATGGATTAGGAGCACTAGAATTCCTTACACTTCTGGCGAGACACCACTCCCAACTCTAAAGTTGGCACCAACCCCAACTCCAAAGCCGTCTGGTGAGGCACCAACCCCATCTCCAAAGCCGTCTGGCGAGACACCACTCCCAACTCCAAAGCCGTTTGGAGAGACACCACTCCCAACTCCAAAGCCGTTTGGAGAGACACCACTCCCAACACCAAAGCCGCTTTGGAGAGACACCACTCCCAACTCCAAAGCCGTTTGGAGAGACACCACTCCCAACACCAAAGCCGCTTGGAGAGACACCACTCCCAACTCCAAAGCCGCTTGGCGAGACACCACTCCCAACTCCAAAGCTGGCACCAACCCCAAAGTCGGCACCAAAGCTCTAAGTTAA 2088 0.4325 MSEEDTKRKKRIVLICTSSFLLVAMVVAVTIGVNNNEVITDSSRMASTQKAVKTFCSPTSFKKDCEESLLSEVGSTTDSRELMKFAFNITVAKISKGLQKTHLLQQVEKEPRASMALSTCKKLMNLSIGEFHRSLDGIASFNLNNLESILVSLRVWLTGAMTYQETCLDGFANITSESGTKMKHILKYSRRMSSNALDVVTDLQNAVKDINATRDDRRLMDDYKGSFVGEQVGAHDDVNEVPSWVGDGSSAGVRRLLQVAQNKLKANVIVAQDGSGQFRTINEALKLVPINGQKPFVIYIKQGIYHEYVDITIVMTNVVMVGDGDRKTIITGNKNMVDGIATYITPTLAVGADYFIAMSIGVENSAGPQKGQAVALRVQGDKTIFYQCTIDGYQDTLYAHTMRQFYRDCTVSGTIDFVFGNAQAVFQNCTFVIRKPLDNQQCIIVAQGRAEENQPSGFVIQNSRIVADHPEAPVTFKAYIGRPWKHYARTIVMDTYIDSVIQPDGFMPWEEPDKTLTGMDTCFYAEVNNTGPGSDKSKRVKWLGVKNLTPESAHIFYPSLFFQGDEWIRSTRIPYTSGETPLPTLKLAPTPTPKPSGEAPTPSPKPSGETPLPTPKPFGETPLPTPKPFGETPLPTPKPLWRDTTPNSKAVWRDTTPNTKAAWRDTTPNSKAAWRDTTPNSKAGTNPKVGTKALS* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3468 695 CDD PMEI-like_3 54 201 - -
Psa6g3468 695 SUPERFAMILY Pectin lyase-like 265 577 IPR011050 -
Psa6g3468 695 PANTHER PECTINESTERASE 12 580 - -
Psa6g3468 695 MobiDBLite consensus disorder prediction 591 695 - -
Psa6g3468 695 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 205 IPR035513 -
Psa6g3468 695 ProSitePatterns Pectinesterase signature 2. 411 420 IPR033131 -
Psa6g3468 695 Gene3D - 261 579 IPR012334 -
Psa6g3468 695 Pfam Plant invertase/pectin methylesterase inhibitor 51 198 IPR006501 GO:0004857
Psa6g3468 695 Pfam Pectinesterase 267 565 IPR000070 GO:0030599|GO:0042545
Psa6g3468 695 MobiDBLite consensus disorder prediction 591 635 - -
Psa6g3468 695 MobiDBLite consensus disorder prediction 648 688 - -
Psa6g3468 695 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 203 IPR035513 -
Psa6g3468 695 TIGRFAM PME_inhib: pectinesterase inhibitor domain 42 201 IPR006501 GO:0004857
Psa6g3468 695 SMART PMEI_2 47 199 IPR006501 GO:0004857
Psa6g3468 695 PANTHER PECTINESTERASE 12 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3468 Psa-Chr6 295161811 295164719 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3468 3 600 Carbohydrate Esterase AT3G05610 43.894 0.0 530