Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3455 ATGAGTGGCCGGTCAAGTCGCACATTATATGTCGGAAATCTTCCTGGTGATATTCGTCTGAGAGAAGTAGAGGATCTTTTCTACAAGTATGGTCCTATCGTTGACATTGATTTGAAGATCCCTCCTAAACCACCAGGTTATGCTTTTGTGGAGTTTGAGGATGCTCGTGATGCTCAAGATGCAATTTACTATAGAGATGGTTATGATTTTGATGGTTATCGATTACGGGTTGAACTTGCACATGGTGGACGGTCAGATTCATCATCAGTAGACCGATATAGCAGGCATCGCGGTAGAAGTGGTAGCCATGGAGTTTCCAGGCGATCTGATTATCGTGTTCTGGTGACTGGATTACCTCCTTCTGCTTCATGGCAAGACCTGAAAGATCACATGCGTAAAGCTGGTGATGTGTGTTTTTCTCAAGTATTTCGGGAGCGTGGAGGCTTAACAGGGATTGTGGATTATACCAATTATGATGATGTGAAATATGCTATCAGGAAACTTGATGACTCTGAATTTCGAAATGCATTTTCTCGGGCATACATACGAGTGAGGGAATATGATCGGAGTTATTCTAGAAGTCCTAGTCGTGATTCAAGGAGGAGCTATTCTCGAAGCCGCAGCCCATATGCATCACGAAGTCGAAGCCGCAGTCTTAGTCATAGCTATAGTGGCAGGAGCAGAAGTTTGTCTCCGAAAGCAAAACACTCCCGGCGCTCATTATCTCTTTCAAGATGTAGCCTTTTGCGGCGACCTGGGAACTGCATGTTAGGATCTTGA 780 0.4462 MSGRSSRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYRDGYDFDGYRLRVELAHGGRSDSSSVDRYSRHRGRSGSHGVSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAIRKLDDSEFRNAFSRAYIRVREYDRSYSRSPSRDSRRSYSRSRSPYASRSRSRSLSHSYSGRSRSLSPKAKHSRRSLSLSRCSLLRRPGNCMLGS* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3455 259 Gene3D - 112 188 IPR012677 -
Psa6g3455 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Psa6g3455 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Psa6g3455 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Psa6g3455 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Psa6g3455 259 CDD RRM1_SF2_plant_like 8 79 - -
Psa6g3455 259 MobiDBLite consensus disorder prediction 188 242 - -
Psa6g3455 259 SMART rrm1_1 112 181 IPR000504 GO:0003723
Psa6g3455 259 SMART rrm1_1 8 78 IPR000504 GO:0003723
Psa6g3455 259 MobiDBLite consensus disorder prediction 205 230 - -
Psa6g3455 259 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 245 - -
Psa6g3455 259 CDD RRM2_SF2_plant_like 111 186 - -
Psa6g3455 259 Gene3D - 2 111 IPR012677 -
Psa6g3455 259 SUPERFAMILY RNA-binding domain, RBD 5 178 IPR035979 GO:0003676
Psa6g3455 259 MobiDBLite consensus disorder prediction 88 106 - -
Psa6g3455 259 MobiDBLite consensus disorder prediction 188 204 - -
Psa6g3455 259 MobiDBLite consensus disorder prediction 88 108 - -
Psa6g3455 259 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3455 Psa-Chr6 294392830 294397894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3455 1 169 Eukaryotic Initiation Factors Gene Family AT1G71770 24.138 4.76e-06 45.4