Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3454 ATGAACGGTGGCGAGGGAGACAAAACGTTGCCCATAGCAAATGTGGGTAGAATAATGAAGCAAAATCTTCCTCCCAAGGCAAAGATCTCAAAAGAAAGCAAAGAACTGATGCAAGAGTGTGCGACAGAGTTCATAAGTTTCGTGACAGGTGAAGCATCTGACAAGTGTCACAAGGAGAATCGAAAGACAGTTAGTGGAGACGACATCTGTTGGGCTCTGTGTTCGTTAGGGTTTGACAACTATGCTGAAGCCATTGGAAGATGGAATCAACGACCAAGAACATTTCTAATCTTGTTGGATGCTGTGAGAATTAGGGTTTCAGCGTTTCTTCTATGTATTGGAAAATTGGGACCACTTCTCAACTATACTCTCTTCTGTCTCTCTGACAAGGTACACACGCATACACCAGTAAAGATGAGTTCTGTCTGA 429 0.4312 MNGGEGDKTLPIANVGRIMKQNLPPKAKISKESKELMQECATEFISFVTGEASDKCHKENRKTVSGDDICWALCSLGFDNYAEAIGRWNQRPRTFLILLDAVRIRVSAFLLCIGKLGPLLNYTLFCLSDKVHTHTPVKMSSV* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3454 142 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4 1 93 - -
Psa6g3454 142 SUPERFAMILY Histone-fold 7 91 IPR009072 GO:0046982
Psa6g3454 142 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 9 73 IPR003958 -
Psa6g3454 142 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 93 IPR027113 GO:0001228|GO:0006355|GO:0016602
Psa6g3454 142 ProSitePatterns NF-YB/HAP3 subunit signature. 40 56 IPR003956 GO:0005634|GO:0006355|GO:0043565
Psa6g3454 142 Gene3D Histone, subunit A 2 94 IPR009072 GO:0046982
Psa6g3454 142 PRINTS CCAAT-binding transcription factor subunit A signature 37 55 - -
Psa6g3454 142 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Psa6g3454 142 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3454 Psa-Chr6 294247281 294249167 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3454 5 95 CCAAT-HAP3 Transcription Factor Family AT2G47810 68.132 2.66e-42 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Psa6g3454 CBFD_NFYB_HMF 1.5e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3454 K08065 - gmx:100791116 152.525