Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3444 ATGGATTCCAACAACAAATCTTCCGAACAAGTCATTTCAGAATTGGTTGAAATGGGTTTTGACCATTCCACAATTCTCGAAGCCATAAAAGTAGTGGGTCTATCGATTCCAAGCGTTGTGGAACATATCTTCAATACTAACACTAGTACTCGTAAAAGCAGTGATCGTGAACCATCCACTAGTAATGGAAATGCTCTCAAAAAACGAACTTTTTCATCTTCCTTTCAAGTTCCAAAGCCCAGAACAATCAACCATTATTTTCAATCCAGTGATAAAGGCAATGACAGAAAGAAAAATGCTATTGTTGTTGTCGTTGATGATGATGATGATGTGGAAGAGTATAATAAGGCTTTACCTCAAATGGGAAGTGATATTGATCGAGGTGTTCCTCGAGATTTGGATGTTGCATTGGATTGGGAACAAAGGGCTAGCATTTTGTTGCAAAAGCATTTTGGTTTTTCAGCCTTGAAGAGTTTTCAGAAGGAAGCTCTCTCTGCTTGGATTGCAAACAAGGACTGTCTTGTCCTGGCTGCAACTGGATCTGGGAAATCTCTGTGCTTTCAGATTCCGGCTTTGTTAACCGGGAAAGTGGTGGTTGTGATTTCGCCTTTAATAAGCCTAATGCATGATCAATGCTTAAAGCTAACAAAACATGGAATCAGTGCCTGTTTTCTTGGCTCTGGGCAGCCTGATAATACTGTTGAAAAGAAAGCAATGAGAGGCATGTATAATATAGTGTATGTTTGCCCAGAGACAGTTCTAAGATTGATTCAACCTCTGCAGAAGCTTGCAGAAGGCCGTGGTATAGCTTTGTTTGCAATTGATGAGGTACACTGTGTTTCTAAATGGGGTCATGATTTCCGTCCTGCTTACAGCCGACTATCTGCATTGAGGGAAAATTTCACTGCTAGCAAGCTAAAATCCCTGAAATTTGATATACCTCTAATGGCATTGACAGCTACAGCTACAAAGAGAGTTCAAGAAGACATTTTAAAATCACTACGCATGTCAAAAGATACAAATGTTGTTCTCACATCATTTTTTCGACCTAATTTACGCTTCACGGTAAAGAATAGTAGAACATCATGGGCTTCTTATGAAAAAGATTTTCATGAGCTGATTAAAGTATATGGTGGAAAAAATAAAAATGGTGGAAATAAAAAAGCTTTCACCTCAGATGATACAGATGATGTTTCCATTTGCTCTGATTCTGGTGGAATGTCTGATACAGACAGTATTTCTTCTTATGATGTGGACGGAGACCAAGATGACTATGATGATAGAGATACTAATGCAATGTGCTCACGAAACACCGGAAAGCATAAAAGAAGAAAATTGACAATTGAGTTCCTGGAAAATGATGTTGATGTCTTTCAAAGTGCGGATGACTTGGATGTTACATGTGGTGAATTTTGTGTGCAACCTCTTCCCAAGCAATGTGAGTTATCTGAGACAATTGATCCACCTACAAAACCAGAAAAAAGACTCGAAATGCTTAAGGAGCCTTTGGGACAAGGACCTACAATTATATATGTACCCACCAGAAAAGAAACTGTGAAAATTGCTAAGTATCTATGCAACTCTGGCGTGAAGGCTGCTGCTTATAATGCCGGGCTGCCGAAGTTGCATCTAAGAAGGACTCATAAAGAGTTTCATGAAAATACTTTAGAGGTTGTTGTTGCAACAATAGCATTTGGAATGGGAATTGACAAATCGAATGTTAGAAGAATCATTCACTATGGTTGGCCGCAGAGTTTGGAAGCCTACTACCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAATTAGCAGATTGCATTCTATATGCAAACCTAGCAAGGAAGCCATCACTTTTGCCAAGTCGTAGAAGTGAAGAAATGATAAAACAAGCGTATATCATGTTGTCTGATTGTTTCAGATATGGAATGAATATTTCATGTTGTCGAGCAAAGACACTTGTAGAATACTTTGGAGAGGATTTCAGCCATCAGAAATGTCTCTTATGTGATGTGTGCACTAATGGACCACCTCAAAGGAAGAATCTAATAGAGGAAGCTTGTATTTTACTGCAAACTATAGGGTCCCATAATGCACGTAACTATTCCATGGATTCCTCGTATAACGATGATATCCATTTTGATTCCAAGGATAGAAGACTAGGAGAGAGGCCAAGTCTTATGACGTTAGTTAGAAATATAAGGGAGCAGTTTCAAAAATTTATAACAACTGATATATTGTGGTGGAGAGGCCTTACTCGAATTTTGGAAGCTAAAGGATATATCAGAGAAGGAGATAACAAGACCAATGTTCAGATAAAATACCCGGAACTAACAGAACTAGGTTTGGAATTTGTGAAGTCCATGACTGAAGAAACTTTTTATGTTTACCCTGAGGCAGATATGTTGCTTGAAACAAAAACTGACAAACCATTTTCCTCATTCTCAGAATGGGGAAAAGGTTGGGCTGATCCTGAGATCCGTCGCCAGCGTCTAGAAAGAATGCAACATGATAGAAGTCCAACGAAGCGGCAAAGCCCCGGAAAGCGAAGAAAGAGGAAAGGTAGAAAAGCGAAACCTGATTTGAGGACTTCTCGAGGTAGACTAACAGCAAAACTCTCAAAACTTAAGTGA 2628 0.3935 MDSNNKSSEQVISELVEMGFDHSTILEAIKVVGLSIPSVVEHIFNTNTSTRKSSDREPSTSNGNALKKRTFSSSFQVPKPRTINHYFQSSDKGNDRKKNAIVVVVDDDDDVEEYNKALPQMGSDIDRGVPRDLDVALDWEQRASILLQKHFGFSALKSFQKEALSAWIANKDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLTKHGISACFLGSGQPDNTVEKKAMRGMYNIVYVCPETVLRLIQPLQKLAEGRGIALFAIDEVHCVSKWGHDFRPAYSRLSALRENFTASKLKSLKFDIPLMALTATATKRVQEDILKSLRMSKDTNVVLTSFFRPNLRFTVKNSRTSWASYEKDFHELIKVYGGKNKNGGNKKAFTSDDTDDVSICSDSGGMSDTDSISSYDVDGDQDDYDDRDTNAMCSRNTGKHKRRKLTIEFLENDVDVFQSADDLDVTCGEFCVQPLPKQCELSETIDPPTKPEKRLEMLKEPLGQGPTIIYVPTRKETVKIAKYLCNSGVKAAAYNAGLPKLHLRRTHKEFHENTLEVVVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLARKPSLLPSRRSEEMIKQAYIMLSDCFRYGMNISCCRAKTLVEYFGEDFSHQKCLLCDVCTNGPPQRKNLIEEACILLQTIGSHNARNYSMDSSYNDDIHFDSKDRRLGERPSLMTLVRNIREQFQKFITTDILWWRGLTRILEAKGYIREGDNKTNVQIKYPELTELGLEFVKSMTEETFYVYPEADMLLETKTDKPFSSFSEWGKGWADPEIRRQRLERMQHDRSPTKRQSPGKRRKRKGRKAKPDLRTSRGRLTAKLSKLK* 876
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3444 875 MobiDBLite consensus disorder prediction 842 859 - -
Psa6g3444 875 Pfam RecQ zinc-binding 623 672 IPR032284 -
Psa6g3444 875 Gene3D - 482 609 IPR027417 -
Psa6g3444 875 Gene3D - 612 795 IPR036388 -
Psa6g3444 875 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 491 638 IPR001650 -
Psa6g3444 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 221 IPR027417 -
Psa6g3444 875 SMART ultradead3 152 357 IPR014001 -
Psa6g3444 875 Gene3D - 123 348 IPR027417 -
Psa6g3444 875 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 6 46 IPR015940 -
Psa6g3444 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 610 IPR027417 -
Psa6g3444 875 SMART helicmild6 519 600 IPR001650 -
Psa6g3444 875 MobiDBLite consensus disorder prediction 827 875 - -
Psa6g3444 875 MobiDBLite consensus disorder prediction 827 841 - -
Psa6g3444 875 MobiDBLite consensus disorder prediction 47 71 - -
Psa6g3444 875 Pfam DEAD/DEAH box helicase 159 327 IPR011545 GO:0003676|GO:0005524
Psa6g3444 875 PANTHER DNA HELICASE RECQ FAMILY MEMBER 2 864 - -
Psa6g3444 875 Pfam Helicase conserved C-terminal domain 491 599 IPR001650 -
Psa6g3444 875 CDD DEXHc_RecQ 147 347 - -
Psa6g3444 875 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 340 IPR014001 -
Psa6g3444 875 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 146 375 IPR004589 GO:0004386|GO:0006310
Psa6g3444 875 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE SIM 2 864 - -
Psa6g3444 875 SUPERFAMILY UBA-like 6 46 IPR009060 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Psa6g3444 Psa-Chr6 293788820 293795043 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3444 494 618 Eukaryotic Initiation Factors Gene Family AT5G11170 26.400 1.76e-07 52.4