Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa6g3444 | ATGGATTCCAACAACAAATCTTCCGAACAAGTCATTTCAGAATTGGTTGAAATGGGTTTTGACCATTCCACAATTCTCGAAGCCATAAAAGTAGTGGGTCTATCGATTCCAAGCGTTGTGGAACATATCTTCAATACTAACACTAGTACTCGTAAAAGCAGTGATCGTGAACCATCCACTAGTAATGGAAATGCTCTCAAAAAACGAACTTTTTCATCTTCCTTTCAAGTTCCAAAGCCCAGAACAATCAACCATTATTTTCAATCCAGTGATAAAGGCAATGACAGAAAGAAAAATGCTATTGTTGTTGTCGTTGATGATGATGATGATGTGGAAGAGTATAATAAGGCTTTACCTCAAATGGGAAGTGATATTGATCGAGGTGTTCCTCGAGATTTGGATGTTGCATTGGATTGGGAACAAAGGGCTAGCATTTTGTTGCAAAAGCATTTTGGTTTTTCAGCCTTGAAGAGTTTTCAGAAGGAAGCTCTCTCTGCTTGGATTGCAAACAAGGACTGTCTTGTCCTGGCTGCAACTGGATCTGGGAAATCTCTGTGCTTTCAGATTCCGGCTTTGTTAACCGGGAAAGTGGTGGTTGTGATTTCGCCTTTAATAAGCCTAATGCATGATCAATGCTTAAAGCTAACAAAACATGGAATCAGTGCCTGTTTTCTTGGCTCTGGGCAGCCTGATAATACTGTTGAAAAGAAAGCAATGAGAGGCATGTATAATATAGTGTATGTTTGCCCAGAGACAGTTCTAAGATTGATTCAACCTCTGCAGAAGCTTGCAGAAGGCCGTGGTATAGCTTTGTTTGCAATTGATGAGGTACACTGTGTTTCTAAATGGGGTCATGATTTCCGTCCTGCTTACAGCCGACTATCTGCATTGAGGGAAAATTTCACTGCTAGCAAGCTAAAATCCCTGAAATTTGATATACCTCTAATGGCATTGACAGCTACAGCTACAAAGAGAGTTCAAGAAGACATTTTAAAATCACTACGCATGTCAAAAGATACAAATGTTGTTCTCACATCATTTTTTCGACCTAATTTACGCTTCACGGTAAAGAATAGTAGAACATCATGGGCTTCTTATGAAAAAGATTTTCATGAGCTGATTAAAGTATATGGTGGAAAAAATAAAAATGGTGGAAATAAAAAAGCTTTCACCTCAGATGATACAGATGATGTTTCCATTTGCTCTGATTCTGGTGGAATGTCTGATACAGACAGTATTTCTTCTTATGATGTGGACGGAGACCAAGATGACTATGATGATAGAGATACTAATGCAATGTGCTCACGAAACACCGGAAAGCATAAAAGAAGAAAATTGACAATTGAGTTCCTGGAAAATGATGTTGATGTCTTTCAAAGTGCGGATGACTTGGATGTTACATGTGGTGAATTTTGTGTGCAACCTCTTCCCAAGCAATGTGAGTTATCTGAGACAATTGATCCACCTACAAAACCAGAAAAAAGACTCGAAATGCTTAAGGAGCCTTTGGGACAAGGACCTACAATTATATATGTACCCACCAGAAAAGAAACTGTGAAAATTGCTAAGTATCTATGCAACTCTGGCGTGAAGGCTGCTGCTTATAATGCCGGGCTGCCGAAGTTGCATCTAAGAAGGACTCATAAAGAGTTTCATGAAAATACTTTAGAGGTTGTTGTTGCAACAATAGCATTTGGAATGGGAATTGACAAATCGAATGTTAGAAGAATCATTCACTATGGTTGGCCGCAGAGTTTGGAAGCCTACTACCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAATTAGCAGATTGCATTCTATATGCAAACCTAGCAAGGAAGCCATCACTTTTGCCAAGTCGTAGAAGTGAAGAAATGATAAAACAAGCGTATATCATGTTGTCTGATTGTTTCAGATATGGAATGAATATTTCATGTTGTCGAGCAAAGACACTTGTAGAATACTTTGGAGAGGATTTCAGCCATCAGAAATGTCTCTTATGTGATGTGTGCACTAATGGACCACCTCAAAGGAAGAATCTAATAGAGGAAGCTTGTATTTTACTGCAAACTATAGGGTCCCATAATGCACGTAACTATTCCATGGATTCCTCGTATAACGATGATATCCATTTTGATTCCAAGGATAGAAGACTAGGAGAGAGGCCAAGTCTTATGACGTTAGTTAGAAATATAAGGGAGCAGTTTCAAAAATTTATAACAACTGATATATTGTGGTGGAGAGGCCTTACTCGAATTTTGGAAGCTAAAGGATATATCAGAGAAGGAGATAACAAGACCAATGTTCAGATAAAATACCCGGAACTAACAGAACTAGGTTTGGAATTTGTGAAGTCCATGACTGAAGAAACTTTTTATGTTTACCCTGAGGCAGATATGTTGCTTGAAACAAAAACTGACAAACCATTTTCCTCATTCTCAGAATGGGGAAAAGGTTGGGCTGATCCTGAGATCCGTCGCCAGCGTCTAGAAAGAATGCAACATGATAGAAGTCCAACGAAGCGGCAAAGCCCCGGAAAGCGAAGAAAGAGGAAAGGTAGAAAAGCGAAACCTGATTTGAGGACTTCTCGAGGTAGACTAACAGCAAAACTCTCAAAACTTAAGTGA | 2628 | 0.3935 | MDSNNKSSEQVISELVEMGFDHSTILEAIKVVGLSIPSVVEHIFNTNTSTRKSSDREPSTSNGNALKKRTFSSSFQVPKPRTINHYFQSSDKGNDRKKNAIVVVVDDDDDVEEYNKALPQMGSDIDRGVPRDLDVALDWEQRASILLQKHFGFSALKSFQKEALSAWIANKDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLTKHGISACFLGSGQPDNTVEKKAMRGMYNIVYVCPETVLRLIQPLQKLAEGRGIALFAIDEVHCVSKWGHDFRPAYSRLSALRENFTASKLKSLKFDIPLMALTATATKRVQEDILKSLRMSKDTNVVLTSFFRPNLRFTVKNSRTSWASYEKDFHELIKVYGGKNKNGGNKKAFTSDDTDDVSICSDSGGMSDTDSISSYDVDGDQDDYDDRDTNAMCSRNTGKHKRRKLTIEFLENDVDVFQSADDLDVTCGEFCVQPLPKQCELSETIDPPTKPEKRLEMLKEPLGQGPTIIYVPTRKETVKIAKYLCNSGVKAAAYNAGLPKLHLRRTHKEFHENTLEVVVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLARKPSLLPSRRSEEMIKQAYIMLSDCFRYGMNISCCRAKTLVEYFGEDFSHQKCLLCDVCTNGPPQRKNLIEEACILLQTIGSHNARNYSMDSSYNDDIHFDSKDRRLGERPSLMTLVRNIREQFQKFITTDILWWRGLTRILEAKGYIREGDNKTNVQIKYPELTELGLEFVKSMTEETFYVYPEADMLLETKTDKPFSSFSEWGKGWADPEIRRQRLERMQHDRSPTKRQSPGKRRKRKGRKAKPDLRTSRGRLTAKLSKLK* | 876 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa6g3444 | 875 | MobiDBLite | consensus disorder prediction | 842 | 859 | - | - | |
Psa6g3444 | 875 | Pfam | RecQ zinc-binding | 623 | 672 | IPR032284 | - | |
Psa6g3444 | 875 | Gene3D | - | 482 | 609 | IPR027417 | - | |
Psa6g3444 | 875 | Gene3D | - | 612 | 795 | IPR036388 | - | |
Psa6g3444 | 875 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 491 | 638 | IPR001650 | - | |
Psa6g3444 | 875 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 103 | 221 | IPR027417 | - | |
Psa6g3444 | 875 | SMART | ultradead3 | 152 | 357 | IPR014001 | - | |
Psa6g3444 | 875 | Gene3D | - | 123 | 348 | IPR027417 | - | |
Psa6g3444 | 875 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 6 | 46 | IPR015940 | - | |
Psa6g3444 | 875 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 195 | 610 | IPR027417 | - | |
Psa6g3444 | 875 | SMART | helicmild6 | 519 | 600 | IPR001650 | - | |
Psa6g3444 | 875 | MobiDBLite | consensus disorder prediction | 827 | 875 | - | - | |
Psa6g3444 | 875 | MobiDBLite | consensus disorder prediction | 827 | 841 | - | - | |
Psa6g3444 | 875 | MobiDBLite | consensus disorder prediction | 47 | 71 | - | - | |
Psa6g3444 | 875 | Pfam | DEAD/DEAH box helicase | 159 | 327 | IPR011545 | GO:0003676|GO:0005524 | |
Psa6g3444 | 875 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 2 | 864 | - | - | |
Psa6g3444 | 875 | Pfam | Helicase conserved C-terminal domain | 491 | 599 | IPR001650 | - | |
Psa6g3444 | 875 | CDD | DEXHc_RecQ | 147 | 347 | - | - | |
Psa6g3444 | 875 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 164 | 340 | IPR014001 | - | |
Psa6g3444 | 875 | TIGRFAM | recQ_fam: ATP-dependent DNA helicase, RecQ family | 146 | 375 | IPR004589 | GO:0004386|GO:0006310 | |
Psa6g3444 | 875 | PANTHER | ATP-DEPENDENT DNA HELICASE Q-LIKE SIM | 2 | 864 | - | - | |
Psa6g3444 | 875 | SUPERFAMILY | UBA-like | 6 | 46 | IPR009060 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa6g3444 | Psa-Chr6 | 293788820 | 293795043 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa6g3444 | 494 | 618 | Eukaryotic Initiation Factors Gene Family | AT5G11170 | 26.400 | 1.76e-07 | 52.4 |