Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3434 ATGGATCACGCGAGATCGAACAACATCGATGAGAATGTAGGAATTCCAGACGATTTGCGTTGCAAGAGGTCGGACGGGAAACAATGGCGATGCACGGCGATGTCAATGCCGGATAAGACAGTTTGCGAGAAGCATTACATTCAAGCGAAGAAAAGAGCAGCGAATTCCGCCATGAGAGCTAATCTCAAGAAAGCGAAAACATATCCTGACTCTGATGTTTATTTGGAGAGTAAAAGTGATGATTTCGATGCTCCTCTTTCTACTGCATTTAATAATCCCCGTTCTTCTTCCTCTGGGAAGAAGCTATTTGATAAGGTTTCGAAGAATCAGTTTCGGTATACTCCTGAGGGTGCTGACACAACAAGGGGCTCTTCTTCCCGTCGTGATTCCAAGCTTGGTGAGGGTGATGATTCCCCTGATCACGCCGATGATGAGGATGCTGTTCTGTATGAAGAGAATTGGGTCTCTAATGATTCCCCACCTGCTTCGGGTGATGAATCTGCTGGGAAAATGCCGCAAGGGAGCCTTGATGCCAATGCTACTACTGAATATTCTGACGGAACCTCGGATTCTTCTCAAGAGACTGGCGGGCAGACTTGTCATCAGTGCAGGAAGAATGTTAGAGATAGAGTTACTTGGTGCCTTAAGTGTGATAGAAGAGGATATTGTGATAGCTGTATATCAACTTGGTATTCTAACATTTCGTTGGATGAAATTCAGAGGCTATGTCCTGCATGCCGTGGTATATGCAATTGTAAAATTTGCTTACGTAATGATAATTCAATAAAGGTTCGGATACGTGAGATACCTGTAATGGATAAGTTACAGTATCTTCACTTGTTGCTCTCATCGGTGCTTCCCGTGGTAAAGCAGATTCACCACGAACAATGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCAAGGACAAAATTGAATGCTGATGAGCAGATGTGCTGCAATTTATGCCGGATACCTATCACTGATTATCATCGACGCTGTCCAAGTTGTTCATATGATTTGTGCCTTATTTGTTGCCGAGATCTTCGGGAAGCCACTGTACATCAGAGTAAAGAACCTCAAACAGAGCAAGCAAGAATTACTGATCAAAACATATTAAGCAAGTTTCCTCACTGGAGATCCAATGACAATGGAAGTGTTCCATGCCCCCCTAAGGAGTATGGTGGTTGTGGATATTCATCCTTAAATTTAAGTCGGATTTTCAAGATGAACTGGGTTGCAAAATTAATAAAAAATGTAGAAGAAATGGTTAGTGGATGTAAAATGAGTGATGCTGATGGTCCACCAAAAACAGGATTGAATACTCTCAGGCTTTGCCAATATTCTCAAAGAGAGGCTAGCAATGATAATTATCTTTATTGTCCAACATCGGAAGATCTCAAAACTGATGGCATTGGCATGTTTAGAATGCATTGGAAAACTGGTGAGCCCATTATCGTAAAGCAAGTATTTGATAGGTCATCAATTTCAAGCTGGGACCCATTGGTCATATGGAGAGGGATTCTAGAGACTACAGATGCAAATATGAAAGATGATAACCGAATGGTTAAGGCCATAGATTGCTTAGATGGGTCTGAGGTTGATATCGAGCTTGGTCAGTTCATGAAAGGATATACTGAGGGGCGTATTCTTGAAAATGGTTGGCCACAAATATTGAAGCTGAAAGATTGGCCTTCACCTAGAGCATCTGAAGAATTTCTTTTGTACCAAAGACCTGAGTTTATCAGCAAGCTGCCTTTACTTCAGTATATTCACTCGAAGTGGGGCCTTCTTAATGTTGCAGCTAAGTTGCCTCATTACTCCTTGCAGAATGATGTAGGACCCAAGATCTATATATCTTACGGGATTAATGGTGAACTTGGCAGAGGTGATTCTGTGACAAAACTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTCCATACAAGTGAAGTGAAGCTGAAGGACTGGCAGAGAACAAAAATTGAAATGATGCAGAAACCACATATATGTTCAAGAGGGAGTTCACCTGATTCAGCCCTTTGTACAAAAATTAATGGACTGGATTTGGAATCAGACCAGAAAGATTCAACCATGGATCAAGGGTATGAAGTTTATCCTAGTGCTGAAGGAAATATGGTCAATTGTGAAATTCCATTAAGACAAAATGGAGTCACCTCTGAGATAACACATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGATGTTCCAAAGGTGACTGAATATTTGAAAATGCATTGGAAGGAATTCGGGAAGTCAGATGATATAGTTACATGGCCTCTTTATGGTGGAGCTGTTTTTCTTGACGGACTCCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCGTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTTCAAGCAAGAAATGTTCAGTCCACAGTTCAATTGGGCCTTGATTTCTTATCTCCTGAAAGCCTGGGGGAGGCTGTAAGATTGGCAGAGGAAGTTCGCCGTTTACCTAATGAACATGACGCAAAGCTTCAAGTTTTGGAGGTTGGGAAGATATCTCTCTATGCCGCAAGTTCAGCAATCAAAGAAGTACAGAAACTTGTACTTGACCCAAAACTTGGTGGAGAGATTGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAACTACGAGAAGATGTCTAAACGGAGGCAAATTACTTGTGCATAA 2763 0.418 MDHARSNNIDENVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKTYPDSDVYLESKSDDFDAPLSTAFNNPRSSSSGKKLFDKVSKNQFRYTPEGADTTRGSSSRRDSKLGEGDDSPDHADDEDAVLYEENWVSNDSPPASGDESAGKMPQGSLDANATTEYSDGTSDSSQETGGQTCHQCRKNVRDRVTWCLKCDRRGYCDSCISTWYSNISLDEIQRLCPACRGICNCKICLRNDNSIKVRIREIPVMDKLQYLHLLLSSVLPVVKQIHHEQCFEVELEKKLRGAEIDLPRTKLNADEQMCCNLCRIPITDYHRRCPSCSYDLCLICCRDLREATVHQSKEPQTEQARITDQNILSKFPHWRSNDNGSVPCPPKEYGGCGYSSLNLSRIFKMNWVAKLIKNVEEMVSGCKMSDADGPPKTGLNTLRLCQYSQREASNDNYLYCPTSEDLKTDGIGMFRMHWKTGEPIIVKQVFDRSSISSWDPLVIWRGILETTDANMKDDNRMVKAIDCLDGSEVDIELGQFMKGYTEGRILENGWPQILKLKDWPSPRASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGINGELGRGDSVTKLHFNMRDMVYLLVHTSEVKLKDWQRTKIEMMQKPHICSRGSSPDSALCTKINGLDLESDQKDSTMDQGYEVYPSAEGNMVNCEIPLRQNGVTSEITHPGVLWDVFRRQDVPKVTEYLKMHWKEFGKSDDIVTWPLYGGAVFLDGLHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAEEVRRLPNEHDAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGGEIGYGDPNLTAMVSENYEKMSKRRQITCA* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3434 920 ProSiteProfiles Zinc finger RING-type profile. 200 247 IPR001841 -
Psa6g3434 920 PANTHER JMJC DOMAIN PROTEIN JMJ24 8 909 - -
Psa6g3434 920 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 8 909 IPR045109 GO:0032454|GO:0033169
Psa6g3434 920 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 195 261 IPR018866 -
Psa6g3434 920 Pfam WRC 16 56 IPR014977 -
Psa6g3434 920 Gene3D Cupin 461 859 - -
Psa6g3434 920 Pfam JmjC domain, hydroxylase 787 829 IPR003347 -
Psa6g3434 920 SMART cupin_9 580 850 IPR003347 -
Psa6g3434 920 ProSiteProfiles JmjC domain profile. 573 850 IPR003347 -
Psa6g3434 920 MobiDBLite consensus disorder prediction 122 138 - -
Psa6g3434 920 ProSiteProfiles WRC domain profile. 15 59 IPR014977 -
Psa6g3434 920 MobiDBLite consensus disorder prediction 92 142 - -
Psa6g3434 920 SUPERFAMILY Clavaminate synthase-like 482 858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3434 Psa-Chr6 293468245 293475037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3434 16 56 GRF Transcription Factor Family AT3G13960 46.341 2.46e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Psa6g3434 JmjC 5.5e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3434 K15601 - gmx:100801287 1497.64