Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3423 ATGGAGGATGAATCAGCAACCAATTCGCACGATTCCATTTGCCCAATCTGCCTCGGACCCTTAACTCAAGAATCGTATCTCGACCATTGTTTGCATAGATTTTGCTTCAATTGCATTCTCCGCTGGACCAATATCGTTTCCTCCAAGCACCAAACTCCACCTTCTTCCGTGAAATGCCCCCTTTGTAAGACAGATAATTTTTCTATCATTTATGGACTTGATGGAACTTCCTTTCAGCGCCATTATATAAATACCAATCTTCAAGATTGTTTTGTGTTATCAAAAGCACACAGATATAGATTACAATGCTATTATACTCAACAAGGTTTCTTAGAAGACATATTCAATGTATCACTCTATTGGAAATCTCGTAAGTATAATCAGCCAAACAACTGGCTTCAAACTTGGTTAACAAGGGAAATTCAAGCACTTACCCAGGAAGAGGATGTTGACATCATTGTGCACCATATCTCTGGTGTGGTAAAACCGTTATGGACAAGTAAAGAACAGAAGCTGCACACAAAAGAACCTGAAAAGAAACAGGAAGAGTTCATGATGTCGGTCTCTGAAGCAGCCAGGCCTTTTCTGGGAGCAAGAACAGACAGATTTGTGTATGAGATTCAACTATTTCTTGCTTCAGGATTGAATATTGAAGCTTATGATGCAGTTTACATACAACGATTAGGTTGGAGCTCACCTGGGGAAAACACTGAAGTTTCTCAAAATGAATTGATTGATCGCACTACTGTGATTCCATACCTCTACATATTTGACGATGACTCTGATGGAAATGAGTAG 798 0.3947 MEDESATNSHDSICPICLGPLTQESYLDHCLHRFCFNCILRWTNIVSSKHQTPPSSVKCPLCKTDNFSIIYGLDGTSFQRHYINTNLQDCFVLSKAHRYRLQCYYTQQGFLEDIFNVSLYWKSRKYNQPNNWLQTWLTREIQALTQEEDVDIIVHHISGVVKPLWTSKEQKLHTKEPEKKQEEFMMSVSEAARPFLGARTDRFVYEIQLFLASGLNIEAYDAVYIQRLGWSSPGENTEVSQNELIDRTTVIPYLYIFDDDSDGNE* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3423 265 Pfam Zinc finger, C3HC4 type (RING finger) 14 62 IPR018957 GO:0046872
Psa6g3423 265 ProSiteProfiles Zinc finger RING-type profile. 14 63 IPR001841 -
Psa6g3423 265 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 265 - -
Psa6g3423 265 SMART ring_2 14 62 IPR001841 -
Psa6g3423 265 SUPERFAMILY RING/U-box 9 70 - -
Psa6g3423 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 78 IPR013083 -
Psa6g3423 265 ProSitePatterns Zinc finger RING-type signature. 30 39 IPR017907 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3423 4 76 C3H Transcription Factor Family AT5G19430 35.065 2.72e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3423 - - mtr:MTR_1g082740 475.707