Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3420 ATGTGTTTACCTGAAAAGGTAATAGATAGAGCAGAAGACATGGCACTAGAAGCAGTGGTTTTTCCACAAACACAAGACCCTTTTGGTTATGGAATCAAAGACTTCTACAACTTCAACTTCAACAACTTCGTTGCAAAAGAACAAGAACAAGAACAAAGATCTTTCAGTTTTGTAGAAAACCAGACAGAAAACAATTATCCTTATTATGGAGATTGGAATAACAACATCTCTACTTTGAATGAACTTCAAGAAACTACTACTGATCCAAGTAGTAACAACACTCAGAACTTGGATACTTCACCTTCCATTGACACGGTTGTTCGTCCGAAAAGGCGCAGAGCTAGAAGCAGAAAAAACAAAGAAGAAATTGAGAATCAAAGAATGAATCACATTGCTGTGGAGCGTAATAGAAGGAAGCAGATGAATGAGTATCTTTCTGTTCTTCGCTCTCTCATGCCGGATTCTTACATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTATCAACTTTGTAAAAGAGCTTGAACACAAGTTTCAATTTCTTGGTGCTAAGAAAGAAAAAGAGGTGAAATCTGATGATGATGATGATGATGATGATGATGATGCTGGTGGATCAAACAAAAAGCCATTTTCTGAATTCTTTTCATTTCCACAGTATTCAACAAGCACTTCTAATTCTGCAGCAGTTTTTGGTGAAAAAGTTGGTGAGATTCAGTCTCGCATTGCTGACATAGAAGTAACAATGGTTGAAAGCCATGCAAATCTTAAAATAAGATCCAAAAAGAGACCAAAACAGCTCTTGAAAATGGTGTCTGGTTTTCATAACATGCGACTCACAATCTTGCATCTAAATGTTACCACTACTGGTGAATTTGTTCTCTTCTCTCTCAGTGTTAAGGTTGAAGATGATTGCAAGCTGGGATCAGTGGATGATATAGCAGCAGCTGTATACCAAATGGTGAATAGGATTCAACAAGAGGCAATGTTGAATTAA 999 0.3734 MCLPEKVIDRAEDMALEAVVFPQTQDPFGYGIKDFYNFNFNNFVAKEQEQEQRSFSFVENQTENNYPYYGDWNNNISTLNELQETTTDPSSNNTQNLDTSPSIDTVVRPKRRRARSRKNKEEIENQRMNHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEHKFQFLGAKKEKEVKSDDDDDDDDDDAGGSNKKPFSEFFSFPQYSTSTSNSAAVFGEKVGEIQSRIADIEVTMVESHANLKIRSKKRPKQLLKMVSGFHNMRLTILHLNVTTTGEFVLFSLSVKVEDDCKLGSVDDIAAAVYQMVNRIQQEAMLN* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3420 332 Pfam Helix-loop-helix DNA-binding domain 126 177 IPR011598 GO:0046983
Psa6g3420 332 MobiDBLite consensus disorder prediction 83 103 - -
Psa6g3420 332 SMART finulus 131 182 IPR011598 GO:0046983
Psa6g3420 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 125 188 IPR036638 GO:0046983
Psa6g3420 332 Gene3D - 119 183 IPR036638 GO:0046983
Psa6g3420 332 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 14 332 - -
Psa6g3420 332 MobiDBLite consensus disorder prediction 187 206 - -
Psa6g3420 332 MobiDBLite consensus disorder prediction 83 121 - -
Psa6g3420 332 PANTHER MAX DIMERIZATION, MAD 14 332 - -
Psa6g3420 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 176 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3420 Psa-Chr6 292760446 292762650 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3420 14 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.377 2.30e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa6g3420 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3420 - - pvu:PHAVU_007G181900g 410.994