Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3405 ATGGCGAAGAAGGGTCTGGGTCATGAACTATGGAGAAAAACTCTCGATAATGCTTTAAATCCTAACCCACCGACACTTGGAACTCTCCTTGGTTCTTCTGCTTCTGCTCTAGACTTGAGAAATATGGACCTTGAGAAAGATAAAGAAGACGAGGCATCTCCACGAGGAGTCTTGGAGGCCTGTGTTAGAGGCTTTGATGATCCTGCGTCACCTGAATCGGAAACGAGTTGTTCGGATTCGAGGGCGCGGTCGCATTGGGGGAAATTTTTCAAATTGTGGAAGAAAAAACCAATTAAACGCCTATCTTCTATCCCTCCTATAGCTATCAATGTGCCAAAGATACCAAAGTGGAAAAGCAAAAGCACTAGGGAGACTCAAGTTAAGAGTAATATATGCAAATTCAGGTCTTCTTGGGTGACTTTCAGCCTCTCTGACCTCAGAAGTGCAACCGACAATTTCAGCCACAAAAATTTGATTGGAAGAGGTGGTTTTTCTGAGGTTTACAAGGGTTCTTTGCAAAATGGACGACTAATAGCGGTGAAGAAATTGACTACGGGCAGCACAGATGAGAAGACGGCCGGCTTTCTATCTGAGTTAGGAATTATTGCTCATGTTGATCATCCTAATACTGCAAAGCTTGTTGGATGTTGTGTAGATGGAGAAATGCACATTGTCTTTGAATTGTCTACACTAGGAAGCTTAGGATCCGTTCTTCATGGTTCTGGTTCGAATAAACCTAAATTAGATTGGAGTAAAAGGTATAAAGTCGCTCTTGGAATAGCCGATGGTCTTCTCTATCTGCACGAGAATTGCGAAAGACGGATAATTCATAGAGATATCAAGGCAGAGAATATCCTGCTCACGGAGAATTTCGAGCCACAGATTTGTGACTTTGGGCTTGCAAAGTGGTTACCAGAACAATTGACTCACCATAATGTATCCACATTTGAAGGCACATTTGGGTATTTTGCACCTGAATATTTCATGCATGGCATAGTGGATGAGAAAACTGATGTTTATTCTTTCGGTGTTCTACTTTTGGTGATCATAACCGGGCGTAAGCCAGTGGTTGAAATGCAGAGTATTGTGACGTGGGCGAAACCTTTGCTTGATGCTAATAATGTCAAGGACGTTGTTGATCCTTCTCTTGGAGATGACTATGATCAAGGACAAATAGAATGCGTCGGTTTAACTGCGTCAATGTGTGTCGAACAATCACCTATCTTACGTCCTCGCATGAATCAGGTTGTAACATTGCTAAGAGGGAATGACTCTGCCCTAAATGCAAAAGCAAACACTGTCCAAAGAACATATTCACAAGAGTTACTTGATGTACAAGAATACAACTCCACAAAATATCTAAGTGATCTCAATAGGCATAAGCAAATTGCATTGAGTTTTGACACATCATATTGA 1416 0.4167 MAKKGLGHELWRKTLDNALNPNPPTLGTLLGSSASALDLRNMDLEKDKEDEASPRGVLEACVRGFDDPASPESETSCSDSRARSHWGKFFKLWKKKPIKRLSSIPPIAINVPKIPKWKSKSTRETQVKSNICKFRSSWVTFSLSDLRSATDNFSHKNLIGRGGFSEVYKGSLQNGRLIAVKKLTTGSTDEKTAGFLSELGIIAHVDHPNTAKLVGCCVDGEMHIVFELSTLGSLGSVLHGSGSNKPKLDWSKRYKVALGIADGLLYLHENCERRIIHRDIKAENILLTENFEPQICDFGLAKWLPEQLTHHNVSTFEGTFGYFAPEYFMHGIVDEKTDVYSFGVLLLVIITGRKPVVEMQSIVTWAKPLLDANNVKDVVDPSLGDDYDQGQIECVGLTASMCVEQSPILRPRMNQVVTLLRGNDSALNAKANTVQRTYSQELLDVQEYNSTKYLSDLNRHKQIALSFDTSY* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3405 471 SMART serkin_6 153 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3405 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672|GO:0006468
Psa6g3405 471 Pfam Protein tyrosine and serine/threonine kinase 156 362 IPR001245 GO:0004672|GO:0006468
Psa6g3405 471 ProSiteProfiles Protein kinase domain profile. 153 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3405 471 Gene3D Transferase(Phosphotransferase) domain 1 230 447 - -
Psa6g3405 471 ProSitePatterns Protein kinases ATP-binding region signature. 159 182 IPR017441 GO:0005524
Psa6g3405 471 SUPERFAMILY Protein kinase-like (PK-like) 136 429 IPR011009 -
Psa6g3405 471 PANTHER OS08G0249100 PROTEIN 32 462 - -
Psa6g3405 471 Gene3D Phosphorylase Kinase; domain 1 114 227 - -
Psa6g3405 471 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 32 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3405 Psa-Chr6 291551940 291554476 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3405 117 422 Receptor kinase-like Gene Family AT1G53420 41.534 3.67e-73 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Psa6g3405 PK_Tyr_Ser-Thr 3.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3405 - - cam:101512181 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3880 6 338805121 338808270 Psa6g3405 6 291551940 291554476 ECH
Psa1g4254 1 337701790 337705120 Psa6g3405 6 291551940 291554476 ECH
Psa6g3405 6 291551940 291554476 Psa6g3405 6 291551940 291554476 ECH