Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3390 ATGGGTTGTGTAATTAGCCGAGAAGTGGAGTCGGGTATTGTTACTGAGGTGAAGGAGGAGAGTAGTGTGAGAGTTGAGTCCAGTAGGAAGGTTGAAGAAGTGTCGACGAGTAGAGGTGAGGGGAATGTGGTTGAGGTGAGGGTGAAGAAGATTAAGGAGAAGGAAGAGAAGAGTGACGGTGATGGGGTTCAGCGGCCGAAGGGTGAAAGAAGAAGATCGAAGCCAAATCCGAGGTTAAGTAACTTGCCAAAGCATTTGCAGGGGGAGCAAGTAGCTGCTGGATGGCCGTCTTGGCTTACAGCGGTTTGTGGGGAAGCGCTTAATGGGTGGATTCCGCGAAAGGCTGATACATTTGAGAAAATAGATAAGATCGGTCAAGGAACATATAGTAATGTGTATAAAGCTAAAGATACGCTAACGGGTAAGATTGTTGCATTGAAAAAGGTTCGATTTGACAATTTGGAACCCGAGAGTGTAAAATTCATGGCTAGAGAGATCCTTATACTGCGAAGATTGGATCATCCCAATGTTATAAAGTTAGAAGGTTTAGTTACATCTAGAATGTCCTGGAGTTTGTATCTGGTGTTTGATTACATGGTACATGATTTAGCTGGACTTGCTGCAAGCCCTGACATCAAGTTTACAGAGCCTCAGGTAAAATGTTACATGCATCAACTGCTATCAGGACTTGAGCACTGTCATAATCGGCATGTACTTCACCGCGATATTAAAGGATCGAATCTTCTGATTGACAGCGAAGGAGTACTCAAGATTGCCGATTTTGGACTTGCATCTTTCTTTGATCCAAACCGCAGGCATCCTATGACTAATCGCGTGGTTACCCTTTGGTACCGGCCTCCTGAGTTGCTTCTGGGTGCTACAGATTATGGTGTGGGTGTGGACCTCTGGAGTGCTGGTTGCATTTTAGGAGAGTTATTGTACGGGAAACCAATTATGCCTGGTCGTACAGAGGTGGAACAACTGCATAAGATATACAAGCTTTGTGGTTCACCTTCTGATGAGTATTGGAAGAAGTCAAAGTTGCCCAATGCTACCCTGTTCAAACCTCGAGAGCCATACAGAAGAAGCATAAGAGAGCTTTTTAAAGAATTTCCACCTTCTGCTCTACCCCTTGTCGATACACTTCTTGCAATTGATCCAGTAGAACGGAAGAGTGCCTCAGATGCTCTTAGAAGTGAGTTCTTTACCACAGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAATTATCCCCCAACCAAGGAAATGGATGTTAAACGGCGCGATGATGAAGCTAGAAGATCAAGAGCTGCAGCCAAAGCTCGAGTTGAAGGGGGAAAGAAGCATCGGACACGCGATCGTGCTGTAAAAGCTGCTCCAGAAGCCAATGCTGAGCTTCAACACAATATTGATAGAAGGCGTCTAATAACTCACGCAAATGCTAAGAGCAAGAGTGAAAAGTTTCCTCCGCCGCATGAAGACGGACAACTCGGATTTCCTTTGGGAGCTTCAAATCATATTGATCCAGATATAGTTCCTCATGATGTCTCTTTGGATTCAATGTCTTATACCTTTTCAAAGGAACCATTTCAAGCTTGGTCAGGTCCCATAGGCAATACTACCGGCAATGGTTTCACAAAGCGGAAGAAGAACACTGCGAATACTGCCAACGATGCATTGGATTTATCGAAACCATATAAAGGAACCCTCAAGGATAAGAGTAAGGGAAAGAAAATCATAGCATAA 1746 0.4427 MGCVISREVESGIVTEVKEESSVRVESSRKVEEVSTSRGEGNVVEVRVKKIKEKEEKSDGDGVQRPKGERRRSKPNPRLSNLPKHLQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSWSLYLVFDYMVHDLAGLAASPDIKFTEPQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDSEGVLKIADFGLASFFDPNRRHPMTNRVVTLWYRPPELLLGATDYGVGVDLWSAGCILGELLYGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYRRSIRELFKEFPPSALPLVDTLLAIDPVERKSASDALRSEFFTTEPYACDPSSLPNYPPTKEMDVKRRDDEARRSRAAAKARVEGGKKHRTRDRAVKAAPEANAELQHNIDRRRLITHANAKSKSEKFPPPHEDGQLGFPLGASNHIDPDIVPHDVSLDSMSYTFSKEPFQAWSGPIGNTTGNGFTKRKKNTANTANDALDLSKPYKGTLKDKSKGKKIIA* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3390 581 SUPERFAMILY Protein kinase-like (PK-like) 112 409 IPR011009 -
Psa6g3390 581 MobiDBLite consensus disorder prediction 43 76 - -
Psa6g3390 581 SMART serkin_6 118 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3390 581 MobiDBLite consensus disorder prediction 422 459 - -
Psa6g3390 581 ProSitePatterns Protein kinases ATP-binding region signature. 124 147 IPR017441 GO:0005524
Psa6g3390 581 MobiDBLite consensus disorder prediction 17 36 - -
Psa6g3390 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Psa6g3390 581 PANTHER CELL DIVISION PROTEIN KINASE 44 553 - -
Psa6g3390 581 Gene3D Transferase(Phosphotransferase) domain 1 201 442 - -
Psa6g3390 581 CDD STKc_CDK9_like 118 402 - -
Psa6g3390 581 PANTHER OS01G0367700 PROTEIN 44 553 - -
Psa6g3390 581 Gene3D Phosphorylase Kinase; domain 1 105 200 - -
Psa6g3390 581 MobiDBLite consensus disorder prediction 17 87 - -
Psa6g3390 581 ProSiteProfiles Protein kinase domain profile. 118 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3390 581 MobiDBLite consensus disorder prediction 422 461 - -
Psa6g3390 581 Pfam Protein kinase domain 118 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3390 Psa-Chr6 290637815 290645514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3390 110 440 Core Cell Cycle Gene Families AT5G10270 52.161 1.49e-120 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Psa6g3390 Pkinase 1.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3390 K08819 - gmx:100817289 938.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3390 6 290637815 290645514 Psa6g3390 6 290637815 290645514 ECH
Psa3g0209 3 23139982 23144218 Psa6g3390 6 290637815 290645514 PCT