Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3372 ATGGCATTCTTCCAGAACCGCGTCGTTTTCCCGAAAGAGGAATATCCAGAGATCTTAGAGGAATACGAGTTGGAGGAAGAGGAGGAGGAAGAAGAAGACGACTACGTTTTAGAACCACACGAGTATCTCACCAACAACGAAACTGAACAATCTCATTCAACCTCCTCCGCCATCCCTACCGTCATATTAGCCTTGCCTAACGCCGCAACTGCTGTCGCTGAATCGCCTGAGCCAAAACGGCAGCGAATTGAGCAGGTGGAGGAGAAGAAGTCCATGGAGGATTCGCGGAAATTGTTTCAGCGTCTCTGGACTGACGAGGATGAGATCGTAATTTTGCAAGGGTTTCTGGATTACAACGCGAATCGAGGATCGGCTTATCATAACGACTCTGCGTCGTTCTATGATCAGATTAAGTCGAAGCTTCAGCTCGATTTCAACAAGAGCCAGCTTGTTGATAAACTGCGAAGGTTGAAGAAAAAGTATCGAAACCTTCTCCAGAAATTCGATTCTGGCAAGGAGTTTTTCTTCAAAACCGCTCATGAACAAGCTACCTTCGAAATTTCACACAAAATCTGGAACATTGCAACTCCAATTGGGATTCCTGTTGAAGACGACGGCGAAATAAACCCCAACCCTAACCCAAACGCTAACCCTAACCCTAGCCCAAATTCAGGTCATACTACGCCGGTGAAGAATGAGCCGGTTATTGAGAAGAAAAGGAAGGGATCGCGAACCGCAGCGGAGGAGAGGCAGCAGCTACGCAAGTTGAACGATAATTCAGCAATGAACAAAGATAATCATAATAATTCTACTAACAACAATAGTAGCAATGCTGAAGATGAAAGTGGTGATAAGAGTAACAGTAGGCATAACGTGCCTGTATTGATTGAAGAGACTGTGAAGAGTTGTTTGACTCCATTCTTGAAGGAGTTATCAAGTACTAGTAACATGGGGAGTCCGTTTGGTTTTGGAGGGAGAGGGCTTGGGGGTGGAGGTTTTTCATTGAATCCAATGCCATTTAGTTTTCTGAATTTCGGGAATGGGGATAAGGTGGGAGATGAAAAGTGGAAGAATCAACAGATTTTGGAGCTGGAAGTGTATTCTAAGCGTTTGGAGCTGGTGCAGGATGAGATCAAGGTTGCTTTGGAGGAGTTGAGGTCAAATTCTGGAGCTGGAGCTGGAGGAAGCAGAAAATTTTAA 1200 0.4508 MAFFQNRVVFPKEEYPEILEEYELEEEEEEEEDDYVLEPHEYLTNNETEQSHSTSSAIPTVILALPNAATAVAESPEPKRQRIEQVEEKKSMEDSRKLFQRLWTDEDEIVILQGFLDYNANRGSAYHNDSASFYDQIKSKLQLDFNKSQLVDKLRRLKKKYRNLLQKFDSGKEFFFKTAHEQATFEISHKIWNIATPIGIPVEDDGEINPNPNPNANPNPSPNSGHTTPVKNEPVIEKKRKGSRTAAEERQQLRKLNDNSAMNKDNHNNSTNNNSSNAEDESGDKSNSRHNVPVLIEETVKSCLTPFLKELSSTSNMGSPFGFGGRGLGGGGFSLNPMPFSFLNFGNGDKVGDEKWKNQQILELEVYSKRLELVQDEIKVALEELRSNSGAGAGGSRKF* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3372 399 MobiDBLite consensus disorder prediction 215 289 - -
Psa6g3372 399 MobiDBLite consensus disorder prediction 232 255 - -
Psa6g3372 399 MobiDBLite consensus disorder prediction 256 281 - -
Psa6g3372 399 Coils Coil 239 259 - -
Psa6g3372 399 Coils Coil 12 32 - -
Psa6g3372 399 Pfam Protein of unknown function, DUF573 99 193 IPR007592 GO:0006355
Psa6g3372 399 Coils Coil 147 167 - -
Psa6g3372 399 Coils Coil 364 384 - -
Psa6g3372 399 PANTHER BNAANNG10740D PROTEIN 1 389 - -
Psa6g3372 399 PANTHER BNAANNG10740D PROTEIN-RELATED 1 389 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3372 Psa-Chr6 289885692 289887748 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3372 53 392 GeBP Transcription Factor Family AT5G28040 44.413 2.93e-80 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Psa6g3372 DUF573 8.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3372 - - cam:101492301 426.017