Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3369 ATGGCGGACAAGGCAGTCACCATCAGAACCAGGAAGTTCATGACTAACAGGCTTCTCTCAAGGAAGCAATTTGTCATTGATGTTCTTCATCCAGGGAGGGCCAATGTCTCAAAGGCTGAACTCAAAGAGAAGTTGGCTAGAATCTATGACGTGAAGGACCCAAACACTGTTTTCGTGTTCAAGTTCAGAACTCATTTTGGAGGAGGCAAGTCAACTGGTTTTGGTTTGATCTACGATTCTGTTGAGAATGCTAAGAAGTACGAGCCAAAATACAGACTTATCAGGAATGGGCTTGATACTAAGGTTGAGAAGTCAAGGAAGCAAATGAAGGAGAGGAAGAACAGAGCCAAGAAGATTCGTGGAGTAAAGAAGACCAAGGCTGGCGATGCTGCCAAGGCTGGAAAGAAGAAATAA 414 0.442 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKAGDAAKAGKKK* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3369 137 Gene3D - 1 132 - -
Psa6g3369 137 Hamap 30S ribosomal protein S24e [rps24e]. 4 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
Psa6g3369 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 - -
Psa6g3369 137 MobiDBLite consensus disorder prediction 102 137 - -
Psa6g3369 137 Pfam Ribosomal protein S24e 25 103 IPR001976 GO:0003735|GO:0005840|GO:0006412
Psa6g3369 137 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 108 IPR012678 GO:0003735|GO:0005840|GO:0006412
Psa6g3369 137 ProSitePatterns Ribosomal protein S24e signature. 66 88 IPR018098 -
Psa6g3369 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 IPR001976 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3369 Psa-Chr6 289863840 289865765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3369 1 132 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 87.879 4.13e-85 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3369 K02974 - gmx:100499852 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3369 6 289863840 289865765 Psa6g3369 6 289863840 289865765 ECH
Psa3g0195 3 22176260 22179159 Psa6g3369 6 289863840 289865765 PCT