Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3368 ATGAATGGAATCACTCACCTTGAACAAGGTGACTCTGAGTTTGTTGAACTTGATCCAACTGGTAGATATGGCAGATACAATGAAATCCTCGGCAAAGGAGCTTCAAAGACAGTATATAGAGCGTTTGATGAGTATCAAGGGATTGAAGTTGCTTGGAATCAGGTCAAGCTTTATGATTTCCTTCAAAGTCCTGAAGATCTTGAGAGGCTTTACTGTGAGATTCATCTCTTGAAAACACTGAAACACAAAAACATTATGAAATTTTACACCTCTTGGGTCGATACTGCTAATAGGAATATCAACTTTGTCACTGAAATGTTCACCTCTGGTACACTTAGACAGTATCGGTTAAGGCACAAGAGAGTTAACATAAGAGCGGTGAAGCATTGGTGCATACAGATCCTGAGAGGACTTCTGTATCTACATAGCCATGACCCGCCAGTGATCCATCGAGATCTCAAATGTGATAACATTTTTGTGAATGGAAATCAAGGGGAAGTCAAAATCGGGGATCTTGGCCTTGCAGCAATTCTTCGAAAATCGCATGCTGCACATTGTGTAGGAACACCCGAGTTCATGGCACCTGAAGTGTACGAAGAGTCGTATAATGAACTAGTTGACATATATTCCTTTGGAATGTGCTTATTAGAGATGGTCACATTTGAATATCCCTACAGCGAATGTACTCATCCGGCTCAAATATACAAGAAAGTTATTTCAGGTAAAAAGCCAGATGCTTTGTATAAAGTTAAGGATCCAGAAGTGCGACAATTTATTGATAAATGCTTGGCCACAGTGTCTTTAAGGCTTTCTGCAAAAGAGCTTCTAGACGACTCTTTTCTTCGAATAGATGATTATGAATATGATTTGAGACCTGTAGATAGTGGAGAATTCGACGACTTCATTCCCCTCATCAGAGATCCGCTTTTTGATTTTCGTCGGAGCTATAGTAACTTCAGTAATGAATACTCCAATGGTTTTGGATATGAAGGAGACTCGTATTCTCATCCAGCTGAGAATGAACATTGTGGAATAGAACTTTTCGAGCACCATGATGATGAACCCTCCGAACATGTTGACATAAGTATCAAGGGCAAGCAGAAAGACGACGGTAGCATATTTTTAAGACTAAGAATTTCAGATAAAGAAGGCCACGTTCGGAATATTTATTTCCCATTTGACATAGAGATGGACACAGCAATAAGCGTGGCGACTGAGATGGTTGCAGAACTTGACATAACCGATCAGGATGTTACCAGCATTGCCGAGATGATAGACGGAGAAATTGCTTCTTTGGTACCTGAATGGCAATCAGGACCAGGAATCGTCGAAACTCCCCGTTTTGCAAATCAAGGCTTCTGCCGCAATTGTGTGTCGAATCATACTTCAAGTGGCTCCCTCATGGATTACCTTTCGCATAATCAGGGTAACTTGCAACTTCCCGAATATTGTAAGCACGGATGTGCCTCAATGCACGGCCGGTTCGAGGAGATTACTTTCCCATCCGAGGAGTGTGACAATCATGTTAGAGAGAATCTGAACGTATCAAACCGATCGGACAGTTTACAATATCAAGGGGTATGGAATCAGCATGAAAGCCGTGAACTGAGTCCGGTGGAATCTGATCAAAGTCATTCCGACGAACAAAACGAACAATTAGATAAATCAATATCAGCTGAAGATCAAGGACAGATTGTTTCGGAAAATAAGTTTCCCCCGAATGCAACAATTTCCCCAAGATATTCATCAGGAACTCATGATTTCTCCAATATCCGCTCGTTATATTGCGCTCTCAACAATGATTACGAGAAAGAGATCCAAAAGGAACTAAGATGGCTCAAAGCAAGATACCAAATGGAGTTACGAGAACTTAAGGATCAACAACTCGGGATAACAGATAATAAATCCTATCGTAACGGAGAGCACAAGACAGATTACTCCGTTATAAAAGGAGGAATCAATGGAATTCAGCCGAAACCTGTTCGTAAAAGCAGCCCCGATTCGGACGCTGAAAGGACCGAAAATTGTGAGGCGATGGAGTCCCCCGGAGAAGGTATAGTTACTGCAAAGAGTTTTTATACCGGCTCGTTGCTTCCGCATTCTCTGCACAGGACAGTTTCCCTCCCTGTTGATGCATTTGATATATAA 2148 0.4162 MNGITHLEQGDSEFVELDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLRHKRVNIRAVKHWCIQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEESYNELVDIYSFGMCLLEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVRQFIDKCLATVSLRLSAKELLDDSFLRIDDYEYDLRPVDSGEFDDFIPLIRDPLFDFRRSYSNFSNEYSNGFGYEGDSYSHPAENEHCGIELFEHHDDEPSEHVDISIKGKQKDDGSIFLRLRISDKEGHVRNIYFPFDIEMDTAISVATEMVAELDITDQDVTSIAEMIDGEIASLVPEWQSGPGIVETPRFANQGFCRNCVSNHTSSGSLMDYLSHNQGNLQLPEYCKHGCASMHGRFEEITFPSEECDNHVRENLNVSNRSDSLQYQGVWNQHESRELSPVESDQSHSDEQNEQLDKSISAEDQGQIVSENKFPPNATISPRYSSGTHDFSNIRSLYCALNNDYEKEIQKELRWLKARYQMELRELKDQQLGITDNKSYRNGEHKTDYSVIKGGINGIQPKPVRKSSPDSDAERTENCEAMESPGEGIVTAKSFYTGSLLPHSLHRTVSLPVDAFDI* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3368 715 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Psa6g3368 715 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3368 715 CDD STKc_WNK 22 281 - -
Psa6g3368 715 Coils Coil 607 627 - -
Psa6g3368 715 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 1 651 - -
Psa6g3368 715 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3368 715 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Psa6g3368 715 Gene3D - 371 438 - -
Psa6g3368 715 MobiDBLite consensus disorder prediction 531 582 - -
Psa6g3368 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Psa6g3368 715 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 374 428 IPR024678 GO:0004674|GO:0005524
Psa6g3368 715 MobiDBLite consensus disorder prediction 535 555 - -
Psa6g3368 715 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 651 - -
Psa6g3368 715 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3368 715 MobiDBLite consensus disorder prediction 556 582 - -
Psa6g3368 715 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3368 Psa-Chr6 289829920 289834193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3368 1 498 MAP Kinase Kinase Kinase AT3G22420 57.749 0.0 599
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Psa6g3368 Pkinase 9.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3368 K08867 - gmx:100272198 1179.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3368 6 289829920 289834193 Psa6g3368 6 289829920 289834193 ECH
Psa3g0193 3 22115149 22118915 Psa6g3368 6 289829920 289834193 PCT