Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3356 ATGGAGCAGTATGAAGTACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCGGCGCTTCTTGTGAGGCATAAACATGAGAAGAAAAAATATGTGTTGAAGAAGATTAGACTTGCCCGGCAAACGGAGCGCTCTCGCAGATCCGCGCACCAGGAGATGGAACTTATCTCTAAATTGCGAAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTCTGCATTATTATAGGTTACTGTGAGGGCGGAGATATGGCGGAAACTATAAAGAAGACTAATGGCGTTCTGTTTCCTGAGGAGAAACTTTGCAAATGGCTTGTTCAACTTCTTATGGCACTTGACTACCTGCACATGAATCACATTCTTCATCGTGATGTCAAGTGTTCAAATATCTTCTTGACGAAAGATCGTGACATACGTCTCGGTGATTTTGGACTTGCCAAAATGTTGACTTCTGATGATCTCGCTTCCTCGGTTGTGGGAACTCCTAGCTATATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCATTGGGATGTTGTATATATGAAATGGCAGGACATAAGCCTGCATTCAAAGCATTTGATATACAAGCATTGATTATCAAGATTAGCAAGTCCATAGTGGCTCCACTACCGACAAAATATTCTAGTTCATTTCGAAGTCTGGTGAAAAGCATGCTGCGAAAAAATCCAGAGCTGAGGCCCAGTGCTTCAGAGCTTCTTGGGCACCCACATCTTCAACCTTATGTTCTAAAGATCCATCTGAAACTCAATAGCCCCAGGCGTAGTACATTGCCTGTTCATTGGCGAGAGTCAAAGTACACGAAGAAAACTAGATTTTTAGATCCAAAAGATGATACCGTTACTATCCGTAAGGATAAGCGCTATTCTTACAGTAATGACCGGACTTTAAATCCTAGTGTGTCTGGAGCTGATCAAGATTCTGTATGTTCTACCCTAGAAATAGGTTGTACTCCTGATCATTTGAATTCAAGAATGGCAGAACTATGTACAGCTAATAGCCGTGACATGAAGTCAGTCCATAAACCTGCTGTTTCCAGAACTTCTAGTATTGCTAAGACTCCAAATCCAAAGTTCACTTCATCAAAAGTTTCCGGCACCAACAAGAAATCAATGGAACCCTCGAACAATCGCAAGGTGGTAAAGCAAACTCTACCTGTTTCACAAAATATCTCAAAATCCGCTCATACAAATCGCAGAGCATCATTTCCATTGTCAACAAGGGGTGGTATTCAGGAGCCTCCTTGCAGGCAGAGTGTTGGTTTACTTAGCCATGTGTCTTCACCAGAGATCTCAGTCAACTCTCCCCGAATTGATAGGATAGCTGAATTTCCATTAGCATCATATGAAGATTCTTTATTCCCAATCAACAAAACGTCAACCTCTGGACAAGTTTCTTCGGGATTCCCACCTCGTGACAATTATTCAACTGTGATAGACAAATGCACAATAGAGGTATGCGATAGGGCCTCTTCAAATCCTAAAAGTACCGATGATTGGCAGGGAATCAAGCGCAGCATGTTAAAGGAAATTCACGAGGATAAAAGCGGTTCCTCTGATCAAAATGCAACGGCAGGTGCATCAAGCTACACATCTTCAGACTTGCAGCGCCGACAGTTTGACACTTCGTCTTTCCAACAAAGGGCTGAAGCCTTAGAAGGGTTGCTTGAATTTAGTGCAAGATTGCTCCAGCAAGCAAGGTATGATGAACTTGGAGTTTTGTTGAAACCATTTGGCCCCGGCAAGGTTTCCCCGAGAGAAACAGCTATATGGTTGAGCAAAAGCTTCAAAGGGAACGCTAACAACACGGAAGAATCCCCGTAA 1881 0.4253 MEQYEVLEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAETIKKTNGVLFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAGHKPAFKAFDIQALIIKISKSIVAPLPTKYSSSFRSLVKSMLRKNPELRPSASELLGHPHLQPYVLKIHLKLNSPRRSTLPVHWRESKYTKKTRFLDPKDDTVTIRKDKRYSYSNDRTLNPSVSGADQDSVCSTLEIGCTPDHLNSRMAELCTANSRDMKSVHKPAVSRTSSIAKTPNPKFTSSKVSGTNKKSMEPSNNRKVVKQTLPVSQNISKSAHTNRRASFPLSTRGGIQEPPCRQSVGLLSHVSSPEISVNSPRIDRIAEFPLASYEDSLFPINKTSTSGQVSSGFPPRDNYSTVIDKCTIEVCDRASSNPKSTDDWQGIKRSMLKEIHEDKSGSSDQNATAGASSYTSSDLQRRQFDTSSFQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPGKVSPRETAIWLSKSFKGNANNTEESP* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3356 626 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Psa6g3356 626 MobiDBLite consensus disorder prediction 362 396 - -
Psa6g3356 626 MobiDBLite consensus disorder prediction 410 424 - -
Psa6g3356 626 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3356 626 CDD STKc_Nek 3 258 - -
Psa6g3356 626 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 611 - -
Psa6g3356 626 MobiDBLite consensus disorder prediction 359 396 - -
Psa6g3356 626 MobiDBLite consensus disorder prediction 537 560 - -
Psa6g3356 626 PANTHER SERINE/THREONINE-KINASE NEK4 1 611 - -
Psa6g3356 626 SUPERFAMILY Protein kinase-like (PK-like) 1 299 IPR011009 -
Psa6g3356 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Psa6g3356 626 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Psa6g3356 626 MobiDBLite consensus disorder prediction 410 430 - -
Psa6g3356 626 MobiDBLite consensus disorder prediction 531 560 - -
Psa6g3356 626 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3356 626 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3356 626 Gene3D Transferase(Phosphotransferase) domain 1 84 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3356 Psa-Chr6 288192444 288199832 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3356 3 479 MAP Kinase Kinase Kinase AT3G13530 28.283 1.33e-38 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Psa6g3356 Pkinase 2.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3356 K08857 - gmx:100804898 1048.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3356 6 288192444 288199832 Psa6g3356 6 288192444 288199832 ECH