Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3344 ATGGCCGGTAATTGTTCGGAGGGATTGGGAGATGATTTTTTTGAACAGATCTTAGCAGTGCCTGAAAGTGGAGTTGGTTACGGGAGGAATACTACAGGCATGGAACATGTTGGAGGAGTGTTGCAACTGGGGTCCACAGCTGGTAGAGGAGGAATAATGCCGTTGGGGTTGAATTTGGAGCAAACTCACCATGGTTTTCTCAGGCACCAAGATGCTGCAACAAGGTTTGTTGACAACGTTGTTGATGTTGAAACCAATATTACAAACACTAACAACAACAATAACCATCATCATCTTCGTCTTCATGATATCAATAACAATAATACTAGTTCTTCCTCACCCTCTTCTACTCCAGGAATCACTGATAGGGATTCGATGCAGCACATGAGGGGTTTGTTTTCAACGTTTGGACAAATGCATACTCCCACTCATGCTCAGCCTGTACGTCCCATGCTCCCATCTCCAACCCCTCAACCGCAGCTACATCTTCACCATCAACACCAACACCAACAACAGCATTTTCAGAGCCAGCAACCAAATCCAGCCTCTGTTACTGCCATGCCACAACCACCTGGCATCCGTCCTCGGGTTCGAGCAAGAAGAGGCCAAGCCACGGACCCCCACAGCATCGCTGAGCGGTTGCGTCGTGAAAGAATCGCAGAAAGAATGAAGGCGTTACAGGAATTAGTCCCCAGCATCAACAAGACGGACAAAGCGGCTATGCTGGATGAAATTGTTGATTATGTGAAGTTCCTTAGGCTCCAAGTTAAGGTCTTGAGCATGAGTAGACTTGGTGGAGCCGGTGCAGTTGCTCAACTTGTAGCTGATGTTCCTGTTTCCGCTGTCGAGGGTGATGACATAGAAGGTGGCACCAACCAGCAAGCCTGGGCGAAGTGGTCGAACGACGGAACCGAACAACAAGTGGCTAAACTTATGGAAGAAGATGTTGGTGCAGCTATGCAACTTCTTCAATCAAAAGCACTTTGTATCATGCCTATATCTCTAGCCTCAGCAATTTTTCGTATGCCTCAATCAGACTCATCCTCAATCATCAAGCCTGAATCAAACAACCACACATAG 1080 0.4713 MAGNCSEGLGDDFFEQILAVPESGVGYGRNTTGMEHVGGVLQLGSTAGRGGIMPLGLNLEQTHHGFLRHQDAATRFVDNVVDVETNITNTNNNNNHHHLRLHDINNNNTSSSSPSSTPGITDRDSMQHMRGLFSTFGQMHTPTHAQPVRPMLPSPTPQPQLHLHHQHQHQQQHFQSQQPNPASVTAMPQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDKAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPVSAVEGDDIEGGTNQQAWAKWSNDGTEQQVAKLMEEDVGAAMQLLQSKALCIMPISLASAIFRMPQSDSSSIIKPESNNHT* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3344 359 MobiDBLite consensus disorder prediction 156 189 - -
Psa6g3344 359 Gene3D - 198 260 IPR036638 GO:0046983
Psa6g3344 359 Pfam Helix-loop-helix DNA-binding domain 208 252 IPR011598 GO:0046983
Psa6g3344 359 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 7 346 - -
Psa6g3344 359 MobiDBLite consensus disorder prediction 159 183 - -
Psa6g3344 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 201 262 IPR036638 GO:0046983
Psa6g3344 359 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 346 - -
Psa6g3344 359 SMART finulus 209 258 IPR011598 GO:0046983
Psa6g3344 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 203 252 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3344 Psa-Chr6 286941094 286945986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3344 177 356 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 76.374 1.64e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa6g3344 HLH 2.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3344 - - gmx:100807570 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3344 6 286941094 286945986 Psa6g3344 6 286941094 286945986 ECH