Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa6g3344 | ATGGCCGGTAATTGTTCGGAGGGATTGGGAGATGATTTTTTTGAACAGATCTTAGCAGTGCCTGAAAGTGGAGTTGGTTACGGGAGGAATACTACAGGCATGGAACATGTTGGAGGAGTGTTGCAACTGGGGTCCACAGCTGGTAGAGGAGGAATAATGCCGTTGGGGTTGAATTTGGAGCAAACTCACCATGGTTTTCTCAGGCACCAAGATGCTGCAACAAGGTTTGTTGACAACGTTGTTGATGTTGAAACCAATATTACAAACACTAACAACAACAATAACCATCATCATCTTCGTCTTCATGATATCAATAACAATAATACTAGTTCTTCCTCACCCTCTTCTACTCCAGGAATCACTGATAGGGATTCGATGCAGCACATGAGGGGTTTGTTTTCAACGTTTGGACAAATGCATACTCCCACTCATGCTCAGCCTGTACGTCCCATGCTCCCATCTCCAACCCCTCAACCGCAGCTACATCTTCACCATCAACACCAACACCAACAACAGCATTTTCAGAGCCAGCAACCAAATCCAGCCTCTGTTACTGCCATGCCACAACCACCTGGCATCCGTCCTCGGGTTCGAGCAAGAAGAGGCCAAGCCACGGACCCCCACAGCATCGCTGAGCGGTTGCGTCGTGAAAGAATCGCAGAAAGAATGAAGGCGTTACAGGAATTAGTCCCCAGCATCAACAAGACGGACAAAGCGGCTATGCTGGATGAAATTGTTGATTATGTGAAGTTCCTTAGGCTCCAAGTTAAGGTCTTGAGCATGAGTAGACTTGGTGGAGCCGGTGCAGTTGCTCAACTTGTAGCTGATGTTCCTGTTTCCGCTGTCGAGGGTGATGACATAGAAGGTGGCACCAACCAGCAAGCCTGGGCGAAGTGGTCGAACGACGGAACCGAACAACAAGTGGCTAAACTTATGGAAGAAGATGTTGGTGCAGCTATGCAACTTCTTCAATCAAAAGCACTTTGTATCATGCCTATATCTCTAGCCTCAGCAATTTTTCGTATGCCTCAATCAGACTCATCCTCAATCATCAAGCCTGAATCAAACAACCACACATAG | 1080 | 0.4713 | MAGNCSEGLGDDFFEQILAVPESGVGYGRNTTGMEHVGGVLQLGSTAGRGGIMPLGLNLEQTHHGFLRHQDAATRFVDNVVDVETNITNTNNNNNHHHLRLHDINNNNTSSSSPSSTPGITDRDSMQHMRGLFSTFGQMHTPTHAQPVRPMLPSPTPQPQLHLHHQHQHQQQHFQSQQPNPASVTAMPQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDKAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPVSAVEGDDIEGGTNQQAWAKWSNDGTEQQVAKLMEEDVGAAMQLLQSKALCIMPISLASAIFRMPQSDSSSIIKPESNNHT* | 360 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa6g3344 | 359 | MobiDBLite | consensus disorder prediction | 156 | 189 | - | - | |
Psa6g3344 | 359 | Gene3D | - | 198 | 260 | IPR036638 | GO:0046983 | |
Psa6g3344 | 359 | Pfam | Helix-loop-helix DNA-binding domain | 208 | 252 | IPR011598 | GO:0046983 | |
Psa6g3344 | 359 | PANTHER | DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED | 7 | 346 | - | - | |
Psa6g3344 | 359 | MobiDBLite | consensus disorder prediction | 159 | 183 | - | - | |
Psa6g3344 | 359 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 201 | 262 | IPR036638 | GO:0046983 | |
Psa6g3344 | 359 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 7 | 346 | - | - | |
Psa6g3344 | 359 | SMART | finulus | 209 | 258 | IPR011598 | GO:0046983 | |
Psa6g3344 | 359 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 203 | 252 | IPR011598 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa6g3344 | Psa-Chr6 | 286941094 | 286945986 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa6g3344 | 177 | 356 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT4G02590 | 76.374 | 1.64e-80 | 244 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Psa6g3344 | HLH | 2.6e-08 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa6g3344 | - | - | gmx:100807570 | 404.445 |