Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3343 ATGACTTGCGTAGCAGAAGCTGAGCGTGACAAATACAACATGATAAATTTCGAAGAGACCGAGTTGCGACTCGGTCTTCCCGGTGGCTCAGTGAGTGATCAGGGCGAGCCATCGGTTAAAAGCAGTTGCGGAAAGAGAGGTTTCGCAGAAACTGCTAATATGGATTTGAAGCTTAATCTTTCTCCAAGTAATGATTCTGTTTCATCTTCTTCAACTATATCTTCTGTTACTGCAAACAAAGGCAAAGAGAAAACTTCAACAACAGTTACTGCACCTCCTCGCGCTAAAGCACAAGTTGTGGGATGGCCACCAGTTAGATCCTTCAGAAAGAACATAGTGAATGTTCAAAAGAGCAACAATGAATCAGAACCAGAAAAAAACACAAGTGTTGGAAATGGAGCATTTGTTAAAGTGAGCATGGATGGTGCACCTTATCTACGTAAGGTAGACCTTAACTTGTACAAGAGCTACCAAGAGCTGTCAGATGCGCTGGCTAAAATGTTTAGTTCTTTCACAATTGACAACTGTGGGTCCCAAGTTACCAAAGACTTTATGAATGAAAGCAAACTGATTGACCTCTTGAACGGCTCTGATTATGTACCAACTTATGAAGACAAAGATGCTGATTGGATGCTTGTCGGCGATGTTCCTTGGGAAATGTTTGTTCAATCCTGCAAGCGCCTTCGAATAATGAAAGGCTCTGAGGCAATTGGGCTAGCGCCAAGGGCAGTGGAAAAGTGCAAGAACAGAAGCTGA 756 0.4299 MTCVAEAERDKYNMINFEETELRLGLPGGSVSDQGEPSVKSSCGKRGFAETANMDLKLNLSPSNDSVSSSSTISSVTANKGKEKTSTTVTAPPRAKAQVVGWPPVRSFRKNIVNVQKSNNESEPEKNTSVGNGAFVKVSMDGAPYLRKVDLNLYKSYQELSDALAKMFSSFTIDNCGSQVTKDFMNESKLIDLLNGSDYVPTYEDKDADWMLVGDVPWEMFVQSCKRLRIMKGSEAIGLAPRAVEKCKNRS* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3343 251 PANTHER AUXIN-INDUCED PROTEIN AUX28 12 244 - -
Psa6g3343 251 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 244 IPR003311 GO:0005634|GO:0006355
Psa6g3343 251 MobiDBLite consensus disorder prediction 60 93 - -
Psa6g3343 251 Gene3D - 128 245 - -
Psa6g3343 251 ProSiteProfiles PB1 domain profile. 133 233 IPR000270 GO:0005515
Psa6g3343 251 SUPERFAMILY CAD & PB1 domains 124 232 - -
Psa6g3343 251 Pfam AUX/IAA family 19 242 IPR033389 -
Psa6g3343 251 MobiDBLite consensus disorder prediction 60 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3343 Psa-Chr6 286650033 286653795 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3343 137 241 B3 DNA Binding Superfamily AT4G23980 33.333 2.17e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Psa6g3343 AUX_IAA 4.7e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3343 K14484 - pop:7474609 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1445 3 132117753 132119254 Psa6g3343 6 286650033 286653795 ECH
Psa6g1341 6 62384930 62387350 Psa6g3343 6 286650033 286653795 ECH
Psa6g3343 6 286650033 286653795 Psa6g3343 6 286650033 286653795 ECH