Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3314 ATGTCGACCGTCGCTCAAACCAAGCCCAAGAAAACTGCTGCGGCAAAGAAGCCACTTTCTCATCCCACTTTCGCTGAGATGATAACTGAAGCAATCACAAGCCTGAAAGAAAGAACCGGTTCAAGCCAATATGCTATAACAAAATTCATCGAAGAGAAACACAAGGACTTACCTCCAACTTACCGTAAGCTTGTTCTCCTCCATCTCAAGAAATCCGTCGCTTCAGGAAAGCTTGTCAAGGTGAAAAGCTCCTTCAAACTCGCTCCGGCGGCCGCAAAAACTGCTCCGGCCAAGACATCGGCTGCTACCAAAGCTCCTAAAGCTGTTACCAAGCCAAGCGCTAAAGCTGTCACAAAGCCCAAGGCTAAAGCTGCTGGGAAGCCGAAAGCCAAAGCTGCGGCAAAGCCGAAAGCTGTTGCGAAGCCAAAGGCTAAGAGCGTGAAGGCTACTCCGGTGAAGAAGGCTGTTGCTAAGAAGGTTGTGAAGAAGGCGAAGAGCGTTAAAAGTCCGGCGAAGAAGGTGAAGAGCGTTAAAACTCCGGTGAAGAAGGCTAAGAAGTGA 561 0.4938 MSTVAQTKPKKTAAAKKPLSHPTFAEMITEAITSLKERTGSSQYAITKFIEEKHKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKLAPAAAKTAPAKTSAATKAPKAVTKPSAKAVTKPKAKAAGKPKAKAAAKPKAVAKPKAKSVKATPVKKAVAKKVVKKAKSVKSPAKKVKSVKTPVKKAKK* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3314 186 Gene3D - 15 100 IPR036388 -
Psa6g3314 186 PANTHER HISTONE H1 2 184 - -
Psa6g3314 186 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 2 184 - -
Psa6g3314 186 Pfam linker histone H1 and H5 family 21 87 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g3314 186 SUPERFAMILY "Winged helix" DNA-binding domain 17 98 IPR036390 -
Psa6g3314 186 MobiDBLite consensus disorder prediction 90 186 - -
Psa6g3314 186 PRINTS Histone H5 signature 7 28 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g3314 186 PRINTS Histone H5 signature 34 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g3314 186 PRINTS Histone H5 signature 115 129 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g3314 186 PRINTS Histone H5 signature 147 164 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g3314 186 PRINTS Histone H5 signature 169 186 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g3314 186 MobiDBLite consensus disorder prediction 122 142 - -
Psa6g3314 186 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 20 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g3314 186 CDD H15 20 87 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g3314 186 MobiDBLite consensus disorder prediction 155 186 - -
Psa6g3314 186 SMART h15plus2 18 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3314 Psa-Chr6 285161570 285163028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3314 11 126 Single Myb Histone (SMH) Gene Family AT5G67580 32.479 1.47e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3314 K11275 - gmx:100810590 137.117