Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3311 ATGGATAGGGTATTCTCCGTTGATGAAATCCCCGACCACTTCTGGTCACCGCCGATTCACGTCTCCGGCGCCGATGAATCCTCCACGATGAGCCGCAGTGCTTCCGAGTGGGCTTTTCAACGCTTCCTTCAAGAAGCTTCGGTTTCTGCCACATCTCCCCCTTCTTCTTCCTCTGTTGCTGATGTGGACCCTCAGTCTAAACTCACCACCATCGCACCAAGGGACGCCGCAGTTTTGTCCAATGGTCATCCACATCCTTCTCCTCCGGTGGTGGCCGTTGATTCCGAGGAATATAGGGCTGTGTTGAAGAGTAAGCTTAATCTTGCCTGCGCTGCGGTTGCCATGACTAGGGGATCTTTGACTAAATCTCAAGATCTAGCCTCTTTTCCTGAGAATGGATCACAGTCGTCTAATCCTACTCAAGTTGGAACTCAGCCCATTTTTGAAGCATCTGCTCCTTCTGGAAACGACCCACCTATATTACAAGATAAAGATGGCAATGTACCACCTGCAATCCCTTCCATACCTCCTCCTGTGCAGAAAAAAACTGTTGTTGCAATTAGGCCATCAACAAGTGGATCATCAAGAGAACTGTCAGATGATGATGAAGCTGAGGGAGAGACAGATATGAATGACAACACAGACCCCGCTGACGTAAAACGAGTAAGGAGGATGCTTTCCAATAGAGAGTCAGCCAGACGCTCAAGACGAAGAAAGCAGGCTCATTTAACTGAGTTGGAAACACAGGTTTCTCAATTAAGAGGTGAAAATTCTTCCTTGGTAAAGCGCCTCACCGATGTAAGCCAAAAGTACACTGATTCTGCTGTTGACAACAGAGTACTGAAAGCTGATGTTGAAACCTTGAGAGCAAAGGTGAAGATGGCTGAAGAGACCGTCAAAAGAATTACTGGATTGAATCCGATGTTTCACATCATGCCTGATATATCATCAATGGGCATGCCATCATTTGATGGAAGCCCTTCAGACAATTCAGCCGATGCAGCTGTTCCTGTGCAAGACGATCCACATCATCACTTCTATCAACCCGCGTCTAATAATCCTATGCCGTGTCACGAAATGAGAGTCAACAATGGGTTGGGAGAAACTTCAATCGAAAATGTGCAGCAGAATAATGCAGCGGTTGTAGGTGGCGGTAACAAGGCGGGTCAAACAGCTCCTCCCGTCCACCGGGTGGCTAGCTTGGAACATCTTCAGAAGCGAATTCGTGGTGGCGTCGATTCTTGTGGCCCTTCTAATGGAGAGCAGTAA 1269 0.4783 MDRVFSVDEIPDHFWSPPIHVSGADESSTMSRSASEWAFQRFLQEASVSATSPPSSSSVADVDPQSKLTTIAPRDAAVLSNGHPHPSPPVVAVDSEEYRAVLKSKLNLACAAVAMTRGSLTKSQDLASFPENGSQSSNPTQVGTQPIFEASAPSGNDPPILQDKDGNVPPAIPSIPPPVQKKTVVAIRPSTSGSSRELSDDDEAEGETDMNDNTDPADVKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRGENSSLVKRLTDVSQKYTDSAVDNRVLKADVETLRAKVKMAEETVKRITGLNPMFHIMPDISSMGMPSFDGSPSDNSADAAVPVQDDPHHHFYQPASNNPMPCHEMRVNNGLGETSIENVQQNNAAVVGGGNKAGQTAPPVHRVASLEHLQKRIRGGVDSCGPSNGEQ* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3311 422 Coils Coil 278 298 - -
Psa6g3311 422 MobiDBLite consensus disorder prediction 213 229 - -
Psa6g3311 422 CDD bZIP_plant_GBF1 221 271 IPR045314 GO:0003700|GO:0006355
Psa6g3311 422 Pfam bZIP transcription factor 219 270 IPR004827 GO:0003700|GO:0006355
Psa6g3311 422 Pfam Basic leucine-zipper C terminal 287 412 IPR020983 -
Psa6g3311 422 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 223 238 IPR004827 GO:0003700|GO:0006355
Psa6g3311 422 MobiDBLite consensus disorder prediction 124 158 - -
Psa6g3311 422 Coils Coil 229 263 - -
Psa6g3311 422 MobiDBLite consensus disorder prediction 173 242 - -
Psa6g3311 422 SUPERFAMILY Leucine zipper domain 220 271 IPR046347 GO:0003700|GO:0006355
Psa6g3311 422 MobiDBLite consensus disorder prediction 124 151 - -
Psa6g3311 422 MobiDBLite consensus disorder prediction 49 89 - -
Psa6g3311 422 SMART brlzneu 216 280 IPR004827 GO:0003700|GO:0006355
Psa6g3311 422 PANTHER BASIC LEUCINE ZIPPER 63 1 404 - -
Psa6g3311 422 MobiDBLite consensus disorder prediction 49 65 - -
Psa6g3311 422 PANTHER BZIP TRANSCRIPTION FACTOR 1 404 - -
Psa6g3311 422 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 218 270 IPR004827 GO:0003700|GO:0006355
Psa6g3311 422 Gene3D - 219 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3311 Psa-Chr6 284990206 284993986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3311 1 309 bZIP Transcription Factor Family AT4G02640 43.155 8.58e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Psa6g3311 bZIP_C 3.3e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3311 K25784 - gmx:100170702 530.406