Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3309 ATGCTACCTCATTTGTTTCTCTTCTCTTCTTACGTTTTTGTCTCTCTCTTTTTTACTGAGGGAGCTCAAATTACAACAAACGATGAACTCTCAACTCTTCTCACCATCAAATCTAGTTTTATTGATCCAATGAATCATCTCAAAGATTGGCATCCGTGGAACAACGCGACGCAACGGCTCCATTGTAACTGGACCGGAGTCGGTTGCAACACGAAAGGCTTTGTAGAGAGTCTAGAACTCTACAACATGAACTTGAGTGGCACTGTTTCAAACCATATTCAATCTCTTTCAAGTTTATCTTATTTCAATATAAGCTGTAACAACTTTGCTTCGACGCTTCCGAAATCACTTTCCAACCTCACTTTTCTCAAGAGCTTTGATGTGAGCCAAAACTACTTCACCGGCGGGTTTCCATTTGGATTCGGAAGATCTGCTGAGTTGAGATCAATCAATGCATCAAGCAATGAATTTTCAGGTCTTCTTCCTGAGGATATTGAAAGTGCAACATTGCTGGAAAGCCTCGATTTTCGAGGAAATTACTTTGTAAGTCCAATTCCAAGGAGTTTTACAAATTTGCAAAATCTTAAATTTCTAGGCCTTTCAGGCAATAACTTGACAGGAAAGATTCCGGAATATCTTGGCGAACTAAATTCTCTAGAGACATTGATTATGGGATACAATGAGTTTGAAGGTGAGATTCCTGCAGAATTTGGTAACATGACAAATCTTCAGTATCTTGATTTGGCTGTAGGAACTCTCAGTGGACAAATTCCACCTGAATTAGGTAAGCTCAAGAAACTCGCTACGATTTACTTATACCGAAACAAATTCACCGCGAAAATTCCACCTCAAATTGGCAATATTATGTCACTAGAATTTCTAGATTTCTCTGATAATCAGATCACAGGAGAAATACCAGAAGAACTTGCTAAATTGGAAAATTTGCAGCTTTTGAATTTAATGAGCAATAAACTAACTGGTCATGTACCAGAAAAGCTTGGTGAATTGAAAAACTTACAAGTGATTGAGTTATGGAAAAATTCTTTAGAAGGCTCTTTGCCGATGAACCTCGGAAGAAATTCTCCTTTGCAGTGGTTAGATGTGTCATCTAACTCATTGTCTGGTGAGATTCCTCCGGGTTTATGTACTACAGGCAATCTCACGAAACTGATTCTCTTTAACAATTCGTTCTCGGGGAACATTCCGACCGGACTGTCAAACTGTTCGTCGTTGGTGCGAGTTCGGATTCAAAACAATGTTATTTCAGGAACTATTCCGGTTGGATTCGGCAATCTTCCACGCCTTCAACGTCTGGAATTGGCGAAGAACAATCTCACCGGGCAAATTCCTATAGATTTAACCTCTTCCACATCACTTTCCTTCATTGATGTATCTTGGAATCGCCTTGAGTCATCATTACCTTCAGAAATTCTTTCTATTCCATCTCTGCAAACCTTCCTTGCCTCTCACAACAGCTTTGGAGGTACTATCCCTGATGAGTTCCAGGGATGTTCATCTCTCTCTGTGCTTGATCTTTCAAGTGCAAATATTTCCGGCGCAATCCCGAAAAGTATAGCTTCTTGTACAAAACTAGTTAACCTTAATCTGAGAAACAATCATTTGACAGGTGGAATACCAAAATCAATCACAAACATGCCTACCTTATCTGTTCTTGACTTGTCCAACAATTCACTGACTGGTCGGATACCTGAAAATTTCGGAAGCTCTCCGGCTCTTGAAACAATGAATCTGTCCTATAACAAACTGGAAGGATCAGTACCCTCAAATGGGATTCTAATGACCATGAATCCTAACAATTTTATCGGAAACGCTGGTCTTTGCGGAGGCTTTCTCCCTTCATGTTCTCGGAGTTTGACCGTGACAAACCAGAAAAGGAGCTCACACATTAGTCGAATTGTTATTGGTTTTTTGACCGGAATTTTGGTTATTTTATCTCTTGCTGCAGCATATTTTGGAGGCAAATGGTTATACAATAAATGCTATCTGCGTAACAATTTCATCTATGATTGGTTCAAACAAGGCAATGAAGATTGGCCTTGGAGGTTAGTAGCATTTCAAAGGATCAGTTTTACAAGTAGTGAGATACTGACTTGCATAAAGGAATCAAATGTGATAGGTATGGGTGGTGCTGGCATTGTTTACAAAGCTGAAATCCATAAACCTCACACAACAGTAGCAGTGAAGAAACTATGGAGGTCAAGCACAGACATAGAAAATGGTGGGAATGATGTATTAAGAGAAGTGGAACTGTTGGGGAGACTGAGGCATAGGAATATTGTAAGACTATTAGGGTATGTTCACAATGAAAGAGATGTGATAATGGTTTATGAGTACATGCCTAATGGAAACCTTGGAACAGCACTGCATGGTGAAGAATCTGCAAGGTTGCTTGTAGATTGGGTTTCAAGGTATAACATAGCTCTTGGAGTTGCACAGGGGATGAACTATCTACACCATGATTGCCATCCATCGGTTATTCACAGGGATATCAAGTCTAATAACATACTCCTTGACGCGAATTTGGAAGCAAGGATAGCAGATTTCGGGTTGGCAAGGATGATGATTCAAAAGAATGAGACTGTTACAATGGTGGCTGGATCTTATGGTTACATTGCACCAGAATATGGATACACTTTGAAAGTAGATGAGAAGATTGACATATACAGTTATGGAGTGGTACTTTTGGAGCTGCTAACTGGTAAGATGCCATTAGACCCTACATTTGAAGAAGCTGTGGACATAGTCGAATGGATACGAAAGAAGAGAAACAATAAAGCCTTGTTAGAAGCACTAGATCCTTCCATAGCTGGTGAGTGCAAATATGTTCAAGAAGAGATGCTTCTTGTGCTCCGGATTGCACTTCTATGTACTGCAAAACTTCCAAAGGAAAGACCATCCATGAGAGACATCATCACAATGCTTGGAGAAGCAAAGCCAAGAAGGAAGAGCATGTGTGGTAATGGAAGACAAGAGAGTAGCAAGGAAAAGGGAACAATCTTTACCACATCCCCAGTAGCAAGTCTTTTGTAG 3051 0.4005 MLPHLFLFSSYVFVSLFFTEGAQITTNDELSTLLTIKSSFIDPMNHLKDWHPWNNATQRLHCNWTGVGCNTKGFVESLELYNMNLSGTVSNHIQSLSSLSYFNISCNNFASTLPKSLSNLTFLKSFDVSQNYFTGGFPFGFGRSAELRSINASSNEFSGLLPEDIESATLLESLDFRGNYFVSPIPRSFTNLQNLKFLGLSGNNLTGKIPEYLGELNSLETLIMGYNEFEGEIPAEFGNMTNLQYLDLAVGTLSGQIPPELGKLKKLATIYLYRNKFTAKIPPQIGNIMSLEFLDFSDNQITGEIPEELAKLENLQLLNLMSNKLTGHVPEKLGELKNLQVIELWKNSLEGSLPMNLGRNSPLQWLDVSSNSLSGEIPPGLCTTGNLTKLILFNNSFSGNIPTGLSNCSSLVRVRIQNNVISGTIPVGFGNLPRLQRLELAKNNLTGQIPIDLTSSTSLSFIDVSWNRLESSLPSEILSIPSLQTFLASHNSFGGTIPDEFQGCSSLSVLDLSSANISGAIPKSIASCTKLVNLNLRNNHLTGGIPKSITNMPTLSVLDLSNNSLTGRIPENFGSSPALETMNLSYNKLEGSVPSNGILMTMNPNNFIGNAGLCGGFLPSCSRSLTVTNQKRSSHISRIVIGFLTGILVILSLAAAYFGGKWLYNKCYLRNNFIYDWFKQGNEDWPWRLVAFQRISFTSSEILTCIKESNVIGMGGAGIVYKAEIHKPHTTVAVKKLWRSSTDIENGGNDVLREVELLGRLRHRNIVRLLGYVHNERDVIMVYEYMPNGNLGTALHGEESARLLVDWVSRYNIALGVAQGMNYLHHDCHPSVIHRDIKSNNILLDANLEARIADFGLARMMIQKNETVTMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGKMPLDPTFEEAVDIVEWIRKKRNNKALLEALDPSIAGECKYVQEEMLLVLRIALLCTAKLPKERPSMRDIITMLGEAKPRRKSMCGNGRQESSKEKGTIFTTSPVASLL* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3309 1016 SUPERFAMILY L domain-like 61 307 - -
Psa6g3309 1016 SUPERFAMILY RNI-like 256 597 - -
Psa6g3309 1016 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
Psa6g3309 1016 Pfam Protein kinase domain 708 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3309 1016 SMART LRR_typ_2 96 120 IPR003591 -
Psa6g3309 1016 SMART LRR_typ_2 552 576 IPR003591 -
Psa6g3309 1016 SMART LRR_typ_2 432 456 IPR003591 -
Psa6g3309 1016 SMART LRR_typ_2 312 336 IPR003591 -
Psa6g3309 1016 SMART LRR_typ_2 192 216 IPR003591 -
Psa6g3309 1016 SMART LRR_typ_2 264 288 IPR003591 -
Psa6g3309 1016 Pfam Leucine rich repeat 171 228 IPR001611 GO:0005515
Psa6g3309 1016 Pfam Leucine rich repeat 530 589 IPR001611 GO:0005515
Psa6g3309 1016 SMART serkin_6 706 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3309 1016 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXL1 7 998 - -
Psa6g3309 1016 Gene3D Transferase(Phosphotransferase) domain 1 790 1005 - -
Psa6g3309 1016 Gene3D Ribonuclease Inhibitor 249 356 IPR032675 -
Psa6g3309 1016 Pfam Leucine rich repeat N-terminal domain 27 70 IPR013210 -
Psa6g3309 1016 Gene3D Ribonuclease Inhibitor 357 625 IPR032675 -
Psa6g3309 1016 ProSiteProfiles Protein kinase domain profile. 706 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3309 1016 Gene3D Phosphorylase Kinase; domain 1 705 789 - -
Psa6g3309 1016 ProSitePatterns Serine/Threonine protein kinases active-site signature. 832 844 IPR008271 GO:0004672|GO:0006468
Psa6g3309 1016 SUPERFAMILY Protein kinase-like (PK-like) 707 979 IPR011009 -
Psa6g3309 1016 Gene3D Ribonuclease Inhibitor 184 248 IPR032675 -
Psa6g3309 1016 PANTHER UNNAMED PRODUCT 7 998 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3309 Psa-Chr6 284940861 284944875 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3309 2 1016 Receptor kinase-like Gene Family AT1G08590 60.928 0.0 1238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa6g3309 Pkinase 3.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3309 - - gmx:100793873 1606.27