Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3304 ATGGAGGGAATAACTGAAGATGAAGTGATAGATGTTGAGAGTGCTTCTGATGGTTCTGTAAATGACGATTCAGACAATGAGGGATCTTTGCCTTCTGAAGTTGATGACGAACTGCATCTTGAGGAACCTCTAACTGAGGCGGAAATAGAAGACCTTATTTCTGAGCTGTTAGAAGTGGAGAGTAAGGCTGCGGAGGCCCAAGAAACTCTTGAAGAAGAATCTCTTGCTAAAGTGGAGAGTGAAGTTAGACAAGAATTGAAGCAAACTCTAAAGGGGGATGATCTGGAAACTGCTGTTGCTGATGAGATGGCTACTTTTAAAGACGAGTGGGAAGCTGTTCTGGATGACCTTGAAACTGAAAGTTCCCACTTACTGGAACAACTTGATGGGGCTGGAATTGAGCTCCCAAGCCTTTATAAGTTGATTGAAAGAGACGCTCCAAATGTTTGTCGCACTGAAGCATGGAAAAAGCGGAATCATTGGGTTGGGTCTCAGGCAACTACTGAAATTGCTACATCAGTTTCTGACGCTGAGAAATATCTACAAATAAACAGACCTGTTAGAAGGCGACATGGAAAATTATTGGAAGAGGGTGCTAGCGGCTTTCTCCAAAAAAAAATTTCTCCGGAAACCCAGGAACCTGGAAAAAAAGAAACCGAGGGGGGCTGGGATGCGTTCAATAAAATAATTTCTGATGGGAGTGGTATTGATGCCTCATTTGGAAGTAAGACCTGGGCTTCTGTTTACTTGGCCAGTACTCCACAGCAAGCTGCCTTAATGGGACTCGAATTTCCTGGAGTTCATGAGGTGGAGGAAATTGATGATGTTGATGGCAATTCTATGGATCCATTTGTTGCAGCAGCCGTTGCAAATGAAAGAGAATTAGAACTTTCTGAAGAGCAAAATCGACATTTTAAAAAGGTCAACGAAGAGGATGATGCAATTGTTGATAGGAAGCTTCAAATACGTTTGAAACATAGGAGGCATCAAAAGAAAAGTAAACTGCGAGAAACAAGCACACCTATCCAGTCGATGGAGAGCAATGTACAGAAGCCTTCATCCGTCGATCAATTTAATCTTGATAGGAAGGAAGGATCTCGAGTTGAAGGGGAAGTTGTGTATGACAATAACAAGGTTGAACATTTGAATATGGAGGCTGATAAAATTAAAGGTTTTGATGCCAGTTTTCATGTTGACAATGAAACGCCTATGGGAGATGATAATTTGTCAGATCCTCCCAAATCTTCACTGGGTGATGTTATTGAACAGAGAGGAACCAAGCGTCCAAATGATGGTGAGCTTGATGCTGATAACAAGAAGTACCGGACTGATATCATCATCAGCGACGATGATATACCCGTTTCCAGTTCTGGCAGTAGTGATTCAGATAGTTCAGACGATTCAGATGATTCAGATTCAGATTCAGATTCAGAGATAGCACCGGTTTCAATAAGCACTAAACGAAGACGCAAAAAAAAGATTAGGAGGATACTTGATGACACTGAATTAGGAGAAGAGACAAAAAAGAAAATAGCCATTGAAAAGGAACGTCAAGAACGCCTGAAATCTTTGAGAGTACAGTTTTCTGCTTCATCATTTGACAAAAGCTCGGCTGGCTGTAATGGAAGTTCATCTGAAGGTGCAAGCGTTGAAATTCTTGGTGATGCACTGGCAGGTTATATAGTCAATGTTGTGAGAGAAAAAGGTGAAGAAGCGGTTAGAATACCACCGAGCATTTCAGCTAAGCTGAAGACCCATCAGATTACTGGAATAAGATTCATGTGGGAAAATATAATACAGTCAATCAGAAAAGTTAAGTCTGGAGATAAAGGTCTAGGGTGTATTCTAGCTCATACCATGGGCCTTGGTAAAACATTTCAGGTCATAGCTTTCTTGTATACGGCAATGAGAAGTGTTGATTTGGGTTTAAGAACTGCACTTATAGTCACACCTGTCAATGTGCTACACAATTGGCGGATGGAGTTCATCAAATGGGCACCATCAGAATTAAAGCGACTCAAGGTCTTCATGCTGGAAGATGTATCAAGAGATAGGAGGGCACAATTGCTTGCAAAATGGAGAGCAAAAGGTGGTGTATTCTTAATTGGCTATACCGCTTTCCGGAATTTGTCTTTTGGAAAGAACGCGAAAGACCGGGAGACAGCCCGAGAAATTTGTCATGCTTTGCAGGACGGCCCAGACATTCTTGTGTGTGACGAAGCCCATATCATAAAAAATACTAAGGCTGAAGTTACTCATGCCTTAAAACAAGTAAAGTGCCAGAGAAGAATTGCGCTTACAGGATCACCTCTTCAAAATAATCTCATGGAATATTATTGTATGGTTGATTTTGTACGAGAAGGTTTTCTTGGAAGCAGTCATGAATTTAGAAATCGCTTCCAAAATCCTATAGAGAATGGTCAACACACTAATTCCACTCTGACTGATGTAAAAATTATGAACCAAAGGTCTCACATCCTCTATGAAGAATTAAAAGGCTTTGTCCAAAGAATGGACATGAATGTTGTAAAGAAAGACCTACCACCCAAAACTGTTTTCGTGCTAACAGTCAAGCTTTCTCCCTTACAAAGAAAATTGTACAAGAGATTTCTTGATGTGCACGGGTTCACTGATGTCAGGGAAAATCATGAAAAGTTAAGAAAGAGGAGTTTTTTTGCTGGGTACCAGGCATTGGCTCGGATATGGAACCACCCTGGGATCTTGCAATTGACAAAAGAAGACAAGGACTGTGTAAGACCTGAAGATGCTGTCGAGAATTTCCTTGTTGATGATATCTCAAGTGATGAAAATTCCGATTCTAATGTACTTGCTGGAGAGAAATTGAAGCAAACAAATGATTTGCTGCAAAAGAAGGATGGTGATGGCTTCTTCATAAAGGGCTGGTGGAAAGATATTCTTCATGGAAAAATTTATAAAGAGCTTGATCAAAGTGGCAAAATGGTTTTGCTAATTGATATACTTACGATGAGTTCTGATGTGGGTGATAAAGTGCTGGTTTTTAGTCAGAGCATACCAACCCTAGACCTCATAGAACTTTATCTCTCAAGACTACCACGACGTGGCAAACGAGGGAAGATGTGGAAGAAGGGAAAAGATTGGTATAGGCTGGATGGAAGAACAGAGAGCTCAGAAAGACAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAAAAGGGTAAAATGCACATTAATTTCAACCAGAGCAGGCTCTTTGGGTATTAATCTTCATGCAGCTAACCGCGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTTCAGGCTATATATCGAGCTTGGAGGTATGGGCAGAAAAAGCCCGTGTTTGCTTATCGGTTGCTGGCTCATGGAACTATGGAAGAGAAAATATACAAGCGACAGGTTACAAAAGAGGGGCTTGCTGCTAGAGTGGTAGATCGACAACAGGTGCATAGAACCATATCTAAAGAAGAAATGCTGCATCTCTTTGAGTTTGGTGATGACGAGAATCCTGAGACTTTGGCTGAACTAAGTAAATATGATGGGCTTACTTGTGAACAAAATAATCCGATTTTGGCTGGGGATTCTCTGAAACATACTGTACCACATTCAAATGGAAACGGCTATTCTGACAAGTTAATGGAAAGCTTACTGGGCAAGCATCATCCCCGGTGGATTGCCAATTATCATTTACATGAGTCCCTGTTACAAGAAAACGAAGAGGAAAAACTGTCGAAAGAAGAGCAAGATATGGCTTGGGAGGTGTATCGCAAATCGCTGGAGTGGGAAGAAGTTCAGAGAGTACCGCTCGGTGAGTCTGTGCCTGATCAAAAGGAAGAAGTGCCAAAGGAAGAACACAATGAATCAGAAGATTTCTGCATTTCAACTAAGCTGAGGAATCGTTTCACAACACGTCAATGCACCAATCTTGCGCACTTACTGACACTTAGAAGTCAGGGAATTAGATTTGGGAGCAGCACAGTCTGCGGCGAATGTGCCCAGGAGATAAGGTGGGATAACTTAAAGAAGAAATAG 4041 0.4128 MEGITEDEVIDVESASDGSVNDDSDNEGSLPSEVDDELHLEEPLTEAEIEDLISELLEVESKAAEAQETLEEESLAKVESEVRQELKQTLKGDDLETAVADEMATFKDEWEAVLDDLETESSHLLEQLDGAGIELPSLYKLIERDAPNVCRTEAWKKRNHWVGSQATTEIATSVSDAEKYLQINRPVRRRHGKLLEEGASGFLQKKISPETQEPGKKETEGGWDAFNKIISDGSGIDASFGSKTWASVYLASTPQQAALMGLEFPGVHEVEEIDDVDGNSMDPFVAAAVANERELELSEEQNRHFKKVNEEDDAIVDRKLQIRLKHRRHQKKSKLRETSTPIQSMESNVQKPSSVDQFNLDRKEGSRVEGEVVYDNNKVEHLNMEADKIKGFDASFHVDNETPMGDDNLSDPPKSSLGDVIEQRGTKRPNDGELDADNKKYRTDIIISDDDIPVSSSGSSDSDSSDDSDDSDSDSDSEIAPVSISTKRRRKKKIRRILDDTELGEETKKKIAIEKERQERLKSLRVQFSASSFDKSSAGCNGSSSEGASVEILGDALAGYIVNVVREKGEEAVRIPPSISAKLKTHQITGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVDLGLRTALIVTPVNVLHNWRMEFIKWAPSELKRLKVFMLEDVSRDRRAQLLAKWRAKGGVFLIGYTAFRNLSFGKNAKDRETAREICHALQDGPDILVCDEAHIIKNTKAEVTHALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEELKGFVQRMDMNVVKKDLPPKTVFVLTVKLSPLQRKLYKRFLDVHGFTDVRENHEKLRKRSFFAGYQALARIWNHPGILQLTKEDKDCVRPEDAVENFLVDDISSDENSDSNVLAGEKLKQTNDLLQKKDGDGFFIKGWWKDILHGKIYKELDQSGKMVLLIDILTMSSDVGDKVLVFSQSIPTLDLIELYLSRLPRRGKRGKMWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQKKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPETLAELSKYDGLTCEQNNPILAGDSLKHTVPHSNGNGYSDKLMESLLGKHHPRWIANYHLHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPLGESVPDQKEEVPKEEHNESEDFCISTKLRNRFTTRQCTNLAHLLTLRSQGIRFGSSTVCGECAQEIRWDNLKKK* 1347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3304 1346 MobiDBLite consensus disorder prediction 1 40 - -
Psa6g3304 1346 MobiDBLite consensus disorder prediction 424 439 - -
Psa6g3304 1346 MobiDBLite consensus disorder prediction 444 491 - -
Psa6g3304 1346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 569 837 IPR027417 -
Psa6g3304 1346 Pfam SNF2-related domain 605 907 IPR000330 GO:0005524|GO:0140658
Psa6g3304 1346 SMART helicmild6 1015 1112 IPR001650 -
Psa6g3304 1346 PANTHER RAD54-LIKE 455 1344 - -
Psa6g3304 1346 PANTHER RAD54-LIKE 29 364 - -
Psa6g3304 1346 Coils Coil 107 127 - -
Psa6g3304 1346 PANTHER RAD54-LIKE 455 1344 IPR044574 GO:0016887
Psa6g3304 1346 PANTHER RAD54-LIKE 29 364 IPR044574 GO:0016887
Psa6g3304 1346 CDD SF2_C_SNF 980 1123 - -
Psa6g3304 1346 MobiDBLite consensus disorder prediction 326 366 - -
Psa6g3304 1346 SMART ultradead3 579 800 IPR014001 -
Psa6g3304 1346 Gene3D - 556 837 IPR038718 -
Psa6g3304 1346 MobiDBLite consensus disorder prediction 337 356 - -
Psa6g3304 1346 Pfam Helicase conserved C-terminal domain 988 1112 IPR001650 -
Psa6g3304 1346 Gene3D - 848 1191 IPR027417 -
Psa6g3304 1346 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 992 1160 IPR001650 -
Psa6g3304 1346 Coils Coil 49 76 - -
Psa6g3304 1346 MobiDBLite consensus disorder prediction 420 439 - -
Psa6g3304 1346 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 605 788 IPR014001 -
Psa6g3304 1346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 843 1178 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3304 Psa-Chr6 284722622 284759837 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3304 593 1142 RAD5 or RAD16-like Gene Family AT1G02670 25.394 3.55e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa6g3304 SNF2_N 1.6e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3304 K10779 - sind:105161157 1637.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3304 6 284722622 284759837 Psa6g3304 6 284722622 284759837 ECH