Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3291 ATGACTACTGATCCAAGGGCTACTAAGGGCTATGATGGTATGAATGACTCAAGGGCTGTGAATGACTCAAGGACTGTTAAGGCCTATGATGCTATGAAGGACTTAGGAATCTCTAAGGAAGAGGTGAAACCTGTGCTGAGAAATTTGCTTAAAGTGTATGATAAAAACTGGGAGCTTATTGAAGATGACAACTATCGGACTCTTATAGATGCGTACTTTGAGTCAAAGGAAGATAAGCCAGAAGAACACAAGAGAAAAGCTCCAATCAATTCTCAAGATGGGGAAAGACCAAAACAGAAACTTCACGTGGCAGATAGGGACAACCGGGTTCCATCAGCTGTCAAATCAATAGAAGTGTTGCCTGTAGAAGACAATGACAAACCTCCGAAGACTCTTAAACAGAAATCTATAAAGTCATTTCAAACTTCGTCGTCACACAAACTTCTATCACAGAGAAGATTGAGTGACGATGAAAGGATCTCAAGCTTACCTTCCATGGCTGCTAGAGGTCAAAAAAGTTATCCTGGGGCAGCTTCATCTGCAGGGCTTTATTCAGAGGAACCTAGCCATCCTTCTATTCAGAGGAAAAATATGTCTAGTGATCAACATCAGAAAAAGATTACAACATCAGGAACTGAGAAGCCTAAGTTTCGTGTTGGAACTGCTTCGATGAGTTGCAATGGCTCACTTGATGCTTCAAATGGAAATCTTTCTATCAAATCCCTATCAAAGGTTCTGAAATCCGGTCGATATGTCGATGACATAACAAAAGGTTCTGAAAACGTCAAAGTATCATTATTAGATGAAACTGAAAGTGAGGAGTTTCCAAAATTCAATTACATTCCATGTAATGTAATTTATCAGTGCGCTAATGTCAATATTTCACTGGCTCGGATTGCGGATGAGGGTTGCTGTGCTGATTGTTCAGGCGACTGTCTTTCCTTATCATTTCCTTGTGCTTGCTCTCAAGAAACTGGCGGAGAGTTTGCTTACTCTTCAAACGGTTTATTAAAAGAAAAATTTCTCACAGATTGCATAAATGAACCCCAAGCTCATCATTATGTGTATTGTAAAGAATGCCCAATTGAGAGGTCTAAGAACGAGAGCAAACCTGAACCATGCAGGGGACATCTGGTTAGGAAGTTTATAAAGGAGTGCTGGAAGAAATGTGGATGTGACATGCAGTGTGGAAATCGGGTAGTACAACGAGGTTTAAGCCGGAAATTGCAGGTATTCTTGACTGATCAGGGAAAGGGCTGGGGCGTTAGAAGCCTAGAAGATTTGCCCAAGGGAAGCTTTGTATGTGAATACGCCGGAGAAATTTTAACTAATACAGAGTTATATGATAGGATTGTAATGAGTACTGGCAATGACAGACATACATATCCTGTAACGCTTGATGCGGACTGGGGCTCTGAAGTGGGATTAAAGGATGAAGAGGCGTTGTGCTTAGATGCAACACATAATGGGAATGTTGCAAGATTCATCAATCACAGATGTACTGATTCAAATTTGATAGATATTCCTGTCGAAGTAGAGACACCTGACCGCCACTATTATCATCTTGCCCTCTTTACAAAAAGAAATGTGAGTGCATACGAGGAATTGACATGGGATTATGGAATTGACTTTGATGATCATACCCATCCTATAAAAGCATTTAAATGCTGTTGTGGAAGCGCTCTCTGCCGTGATAAGAAACAAAAAGGAAGTAGATCAGCAAAGACTAAAAAACTCAAGCATACGAATAGACACTGA 1758 0.4056 MTTDPRATKGYDGMNDSRAVNDSRTVKAYDAMKDLGISKEEVKPVLRNLLKVYDKNWELIEDDNYRTLIDAYFESKEDKPEEHKRKAPINSQDGERPKQKLHVADRDNRVPSAVKSIEVLPVEDNDKPPKTLKQKSIKSFQTSSSHKLLSQRRLSDDERISSLPSMAARGQKSYPGAASSAGLYSEEPSHPSIQRKNMSSDQHQKKITTSGTEKPKFRVGTASMSCNGSLDASNGNLSIKSLSKVLKSGRYVDDITKGSENVKVSLLDETESEEFPKFNYIPCNVIYQCANVNISLARIADEGCCADCSGDCLSLSFPCACSQETGGEFAYSSNGLLKEKFLTDCINEPQAHHYVYCKECPIERSKNESKPEPCRGHLVRKFIKECWKKCGCDMQCGNRVVQRGLSRKLQVFLTDQGKGWGVRSLEDLPKGSFVCEYAGEILTNTELYDRIVMSTGNDRHTYPVTLDADWGSEVGLKDEEALCLDATHNGNVARFINHRCTDSNLIDIPVEVETPDRHYYHLALFTKRNVSAYEELTWDYGIDFDDHTHPIKAFKCCCGSALCRDKKQKGSRSAKTKKLKHTNRH* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3291 585 Pfam Ubiquitin-binding WIYLD domain 20 77 IPR018848 GO:0018024
Psa6g3291 585 Gene3D - 14 78 IPR043017 -
Psa6g3291 585 ProSiteProfiles Pre-SET domain profile. 304 404 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa6g3291 585 MobiDBLite consensus disorder prediction 74 214 - -
Psa6g3291 585 Gene3D SET domain 255 566 IPR046341 -
Psa6g3291 585 MobiDBLite consensus disorder prediction 134 149 - -
Psa6g3291 585 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 247 578 - -
Psa6g3291 585 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 21 234 - -
Psa6g3291 585 SUPERFAMILY SET domain 262 564 IPR046341 -
Psa6g3291 585 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 579 IPR025776 -
Psa6g3291 585 SMART preset_2 252 391 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa6g3291 585 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 21 234 - -
Psa6g3291 585 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 247 578 - -
Psa6g3291 585 SMART set_7 407 547 IPR001214 GO:0005515
Psa6g3291 585 CDD SET_SETDB-like 276 541 - -
Psa6g3291 585 MobiDBLite consensus disorder prediction 74 112 - -
Psa6g3291 585 Pfam Pre-SET motif 255 399 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa6g3291 585 Pfam SET domain 419 541 IPR001214 GO:0005515
Psa6g3291 585 ProSiteProfiles SET domain profile. 407 541 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3291 Psa-Chr6 284296241 284312686 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3291 247 564 Su(var)3-9 homologs AT5G04940 28.107 7.77e-33 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa6g3291 Pre-SET 3.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3291 - - mtr:MTR_1g080340 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3291 6 284296241 284312686 Psa6g3291 6 284296241 284312686 ECH
Psa6g3291 6 284296241 284312686 Psa3g1295 3 117291432 117296669 PCT