Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3290 ATGTCTTCATCTTATCCCTCATCCTCGATGAGGACTGCATCGATTAATTCCAACAACAGAAGTGCTGGACACATGTTTTCAAACCCTGCTGAGCTCCTTGATAACATCCCTTTCCCCCCTGCTTCAGAAATGCATTCTATGCCATTCCCTCAAGAAAGTGATGCTATTTCCTGGGGAACAGATCTCTTTGAAGATATGCTTCCGTTTCCTGATAATGTTCCCATCCAGAATGATCATGTGGAGTACAGTGCTTCTAACGTCTTGGGTGGAAATGCCAAAACAACGGAGTTCAAGGAGTGGGTTGATCAGTTAATGCAAGTTGATGATGATTCTCTTCATCCAGATTGGAATGAACTTCTCGGTGATAATAATATGGCAGAACCAACAGCAGCAGAGGAGGCTCAAATTTCAGTGCAGGAGACTCAAGTTTCACTGCAGCAGTATGTTCCATCTAATGAAGAGACTCAATTTTCAGTGCAGGAGACTCAAGTTTCACTGCAGCAGTATGTTCCATCTAATGAAGAGACTCAAGTTTCACTGCAGCAGTATGTACCATCTAATGAAGTTAATGTTTTTCCTAATTCTTCTGGATCGACTACATCACAATCTAAGCCTAGAATGCGTTGGACTCCCGAACTTCACGAGGCCTTTGTGGAAGCCGTCAATCAGCTTGGTGGTAGTGAGAAGGCCACGCCAAAGGGTGTCTTGAACCTGATGAAAGTTGAGGGCCTTACCATCTATCATGTGAAAAGCCACCTCCAGAAATATAGAACTGCCAGATACAAACCGGAAGCATCAGAAGAAATTCCAGAGAAGTTGACTTCAATTGAAGAAATGCCGCCTATAGACTTAAAAACGCCTAAGGGCATTACCGAAGCATTGCGGTTACAGATGGAACTCCAGAAGCGGCTTCATGAACAACTTGAGATTCAAAGAAAATTACAGATTCAAATTGAGAACCAAGGGAAGCATCTACAGATGATGTTTGAGCAACAGATCAAGTCGGGAGAGCCTTCTGCTCCATCATCTAGCGCCGCACTACCTTCCCCAGTTGAAAATTTAGAAAGCTCAAATGAGGGTCACGAAAAGATTGGAATCAACTATAGCACTCCAGACACAAGCGCAAAGCAAAAGGGAGATGATGCTAAAGTTAGCGATGAACTTGACCAGTTGTCCACACCACCCACAAAACGAGTGAAGACCGATTAG 1209 0.4376 MSSSYPSSSMRTASINSNNRSAGHMFSNPAELLDNIPFPPASEMHSMPFPQESDAISWGTDLFEDMLPFPDNVPIQNDHVEYSASNVLGGNAKTTEFKEWVDQLMQVDDDSLHPDWNELLGDNNMAEPTAAEEAQISVQETQVSLQQYVPSNEETQFSVQETQVSLQQYVPSNEETQVSLQQYVPSNEVNVFPNSSGSTTSQSKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPEASEEIPEKLTSIEEMPPIDLKTPKGITEALRLQMELQKRLHEQLEIQRKLQIQIENQGKHLQMMFEQQIKSGEPSAPSSSAALPSPVENLESSNEGHEKIGINYSTPDTSAKQKGDDAKVSDELDQLSTPPTKRVKTD* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3290 402 MobiDBLite consensus disorder prediction 333 402 - -
Psa6g3290 402 Coils Coil 291 311 - -
Psa6g3290 402 MobiDBLite consensus disorder prediction 333 375 - -
Psa6g3290 402 Gene3D - 203 262 - -
Psa6g3290 402 SUPERFAMILY Homeodomain-like 202 258 IPR009057 -
Psa6g3290 402 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 6 401 IPR044848 GO:0003700
Psa6g3290 402 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 6 401 - -
Psa6g3290 402 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 204 258 IPR006447 GO:0003677
Psa6g3290 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 261 IPR017930 -
Psa6g3290 402 Pfam Myb-like DNA-binding domain 206 257 IPR001005 -
Psa6g3290 402 Pfam MYB-CC type transfactor, LHEQLE motif 290 334 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3290 Psa-Chr6 284257013 284260993 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3290 43 346 G2-like Transcription Factor Family AT3G04450 45.192 7.94e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa6g3290 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3290 - - mtr:MTR_1g080330 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3290 6 284257013 284260993 Psa6g3290 6 284257013 284260993 ECH