Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3271 ATGTCTGCTTTCAACACCCCTAGGTTGGTTCTTAACAAGTTCTTGGCTAAATCTCAACGTGAAGGTCAAGGTGCTATTGTTAGAAGAGGCATTGGAAGAGCTGAGTTGAAGAACTTTGATCCTTTTCTATTGCTTGATCATTTCTCAGGGATTACTCATGAAGATAATGCTGGTCACAAGGGTACAATAAGAAGTGGTGATATTCAGTGGATGACTGCAGGTAGGGGAATTATTCACTCTGAAATGCCGGCGGAACAAAACAACAATGGATTGCAACTTTGGATCAACTTAGCGGCCAACGAAAAAATGATTGCGCCAAACTATCAAGAAATTCTAAGTGAGGACATTCCATCCGGCGAAAAAGATGGTGTTGAAGTGCGAGTAATAGCCGGAGAATCCATGGGAATAAAGTCACCGGTCTACACAAGAACACCAACCATGTACCTAGATTTCACCATGAATCCCGGAGCTCAGATGAATCAAACCATTCCCGAATCATGGAATTCTTTGGCATACATAATTGAAGGTGAAGGTGTTTTTGGATCACCAAATTCATCACCAATTTTGGCTCATAATGTCATTGTTTTCACACAAGGGGATGGAGTTAGTGTTTGGAACAAGAACTCTTCGAAGCCTTTGAGGTTTTTGCTGATTGGAGGACAACCTTTGAATGAACCTGTGGCTCAATATGGTCCTTTTGTCATGAATACTCAATCTGAGATTGAGAAAACTATTGAAGATTATCATCATGGTAGAAATGGCTTTGAGATTAAGCTAAATTAA 783 0.4036 MSAFNTPRLVLNKFLAKSQREGQGAIVRRGIGRAELKNFDPFLLLDHFSGITHEDNAGHKGTIRSGDIQWMTAGRGIIHSEMPAEQNNNGLQLWINLAANEKMIAPNYQEILSEDIPSGEKDGVEVRVIAGESMGIKSPVYTRTPTMYLDFTMNPGAQMNQTIPESWNSLAYIIEGEGVFGSPNSSPILAHNVIVFTQGDGVSVWNKNSSKPLRFLLIGGQPLNEPVAQYGPFVMNTQSEIEKTIEDYHHGRNGFEIKLN* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3271 260 PIRSF Pirin 6 50 IPR012093 -
Psa6g3271 260 PIRSF Pirin 49 259 IPR012093 -
Psa6g3271 260 Gene3D Jelly Rolls 51 249 IPR014710 -
Psa6g3271 260 Gene3D Jelly Rolls 117 223 IPR014710 -
Psa6g3271 260 PANTHER PIRIN-RELATED 51 256 IPR012093 -
Psa6g3271 260 PANTHER PIRIN-RELATED 3 49 IPR012093 -
Psa6g3271 260 PANTHER PIRIN-LIKE PROTEIN 51 256 - -
Psa6g3271 260 PANTHER PIRIN-LIKE PROTEIN 3 49 - -
Psa6g3271 260 Pfam Pirin 51 95 IPR003829 -
Psa6g3271 260 CDD cupin_pirin_C 145 222 - -
Psa6g3271 260 SUPERFAMILY RmlC-like cupins 8 256 IPR011051 -
Psa6g3271 260 Pfam Pirin C-terminal cupin domain 148 254 IPR008778 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3271 Psa-Chr6 282991506 282992894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3271 5 257 Calmodulin-binding Proteins AT3G59220 58.993 1.46e-118 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3271 K06911 - gmx:100775597 407.912