Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3268 ATGGCTTCATCTTTGCAGGAGCTTCTTGCAAAGGAAGGATTCAAAGGAAGCAGCAAAAGAGTGCTAAAGTCAAGATCTTCTTTCCACCATGGTGCTTCAAGCGATCCGCTTCATTCCTTGGAAGAGAGACTCTGTGTATCATCAAGCGAACGAATCAAAACACAGAAAACAAAGTCTAAAACAGCCTCAAGGTATCAAATCAGCAGTACAAATGATAGTAAGAACACAAGATCAAGGGATAGTAATAACAATGTCTTTATAGGAAACAAGATAAGTCACGAACGGTTGAAAAACGATGAAACTAAGAAGAACGAGTCTTACGATTCATCAGAAAGTGATAGTGGATTTGAAGATGTTTATCCAAATCAAGTGTCAAATGCGAGAAGAGGCAAAGACAAGAAGGAAAAAGTCGTGGAAAAGCCGTTGAAGAATTCATATTTGTTGACACAATTGAGTGGAAATAGAAAGAGCTATGAAAATAACAATAAAGCTACGAATTCGCAAGATCCTTCTAGTCTTGCTATAGATGAAATTGCTGTGAAAGCACTAGTTTCAATTCTGAATGGATACATAGAAAGTTTTCTAAAAGACGAAGATTTTCGGTCCGTGTTACGCCACAATTGTTTCTCCTCCTTGAACTTCATTCATCTCGAGAAAGAAGAAAACAACTCCGAGACCAAAGTGATTACGAGTCTCGAGCAAGCAATTGAGTGCGTGGAGAAAACGGCTGCGAAAGACGAATCCATATCTGCAATACATTTGAAAAGAGCAACAATGCAGCTTAGTATTATCACAGGTTTGAGTTTGAATGATCTCAAATACGATTTTACGTGCGGGATTCCGAATTTCAAGTTATCAGCCTGTGCTCATCTTTACCTCAGTGTGGTATATTTGATGCAAAGAAAAAAGAAAATCTCCGCGAAACATCTTTTGCAAGTCTTTTGCGATTCGCCTTTTCAGGCGAGGACGATATTGTTGCCTGATCTTTGGGAGCATCTATTTTCGCCGCATCTTTCTCATTTGAAGAAATGGTATAATAGCAAAGAAAGTGAAATTGTTGCGGATACACAAACCAAAGCACGAAAGCTAAAGATTCTTCAAAAAGTTTATAACGAAAATTTGGATTCAGGAACTCGAGTTTTCGCTTTATATTACAAAGATTGGCTCGGTGAAGGAGTTGAAACTCCAACTATTCCTTCTATTGGAATTCCGTCATTATCCGTTACGAGTAGACAGGCAAGTTCGTTCGGTCATTCTTTTGAGTCTGGTAGCTCCAACGAACCATTCTCGCCACAGGCGATGGTAAGCAAGAAACTATATGATTCGTTCTTTGGCGGATATAGGAAGCCTGAAGTTTATGAAGTTGAAGAAGATGATAAAGATGAAGATAGTTTTGAAAATTGCGAGAAAGGCTCTTATGGCTCAACCGTCGTTAAAAAAACGTTGATATACGAATCCGAAACTGTTAAGTTTATGGATCAAAGTAGTGAAGATTTTACTCCAAGTGTTCAAATTCACGAATTCAGAAAGATGCAGCCGAATAAGATCAGCTCTAATCTTGAAGGATCGTATTCTCCAAGCATTCCGCAGGAATTTATCTGTTCTTTGACACGAAAGATCTTTGAAGAACCCGTCACGTTAGAGTCAGGCCAAACCTTCGAACGGAAAGCTATCAAGGCATGGTTTCAAAAGGGAAACAGAACTTGTCCGGTAACAGGAAATACTTTAGAATGCGTGTTCATGCCGTTTACCAACCTTATTTTGAAGCGTTTGATCGATAACTGGAAGACAGAAGATTTCAAGCGTCTTCTTGATTTCGCCTCTCAAGCAGTCCAAAACTCAAAAGAACTTGAGTTGAAAAAGCGCGACGAGACTATTGTTTTCAAGTTACAAAGTCTTTTCGCTTCCTTGAAAGAAGAAGAAAAGTCAACTTATGCTAAGCATATAATCTCTTTAGGAGTTTTTTCATTTCTTTTTAAGAGGTTTGAACTTGGAAACGTCGAAGAAAAATCGCATGTGCTGGAGATTTTGTTAAATTGTATTCAAGCAGATTCTAGTTGCATATATAAGATCGCAAGAAGCGTCGACAGAAAGATTCTTCTTGAGCTTCTTCATAGCAAGATGGTTACTCCAACAACAAATGCAATAGTTTTCCTTACGGAACTTTTGTCGATGAAGAGGAGAAAAGATGTTACTTTTTTCCTAAGTGGCTTGGTTGGTGAAGATGTATATAGTACAATGCATATTGTGCTCATGTATCTCAAGAATTGTTTTCCAATTGAAAAGCCTCTCGTTGCGGTTCTGTTATTGCACTTCGATTTACTGGTTGAGCCTCAAAAGTTAGGCATATACATCAAGACGGCTGTGAATGCCATTGCAGATGCACTTGATGCAGGCTTAGATGATGAGAAGATCCAAAAGAAGTGTTGCAAAGCTCTTTTAATCTTGTGTGGCCATTTTTCTACCACCGGAAAGATAATAACCGATACCACCGTCTTAAAGCAAGCTGGTTATAAAAATGGTAGCTCGGAATTGAAATCTCCTAGCTATGATGAAGAGGATCAACAGTTAGATGTAACCATTTCATCGGAAGATGAGGAAGAAGAAAGGAATGAAGAGTTCATGATAAACTTGTTAGAATCGTTGATCGGCGACGGAGAAAGTCCGTTTTTGAAAACCATATCTAGATGTTTAGAATCTAGACATTTAGATTTGGTGAGGACTTGTCTTATAACTGTCACATGGTTGAGTTCCTCACTTTCTAAACAATATAACGCCGGATTGCATCTTCCCGCATTCTTAGCCGTCATCTCTCAACTGAAAGAAATCCTTCTAAACAGCGAACTCGAGCTCAAAACTCTCGCATCTATGTCATTGTTTAACTTCAGTAAAATATCAGAATGCCGAACGCTTTTGAAGATTATGGCGCAAGATATGGCTCCGATTCTTCATGGACTAGTTGATGTAATATGGACCGCGAAGAAACTACATGCGATTTTGATGTAA 3006 0.3862 MASSLQELLAKEGFKGSSKRVLKSRSSFHHGASSDPLHSLEERLCVSSSERIKTQKTKSKTASRYQISSTNDSKNTRSRDSNNNVFIGNKISHERLKNDETKKNESYDSSESDSGFEDVYPNQVSNARRGKDKKEKVVEKPLKNSYLLTQLSGNRKSYENNNKATNSQDPSSLAIDEIAVKALVSILNGYIESFLKDEDFRSVLRHNCFSSLNFIHLEKEENNSETKVITSLEQAIECVEKTAAKDESISAIHLKRATMQLSIITGLSLNDLKYDFTCGIPNFKLSACAHLYLSVVYLMQRKKKISAKHLLQVFCDSPFQARTILLPDLWEHLFSPHLSHLKKWYNSKESEIVADTQTKARKLKILQKVYNENLDSGTRVFALYYKDWLGEGVETPTIPSIGIPSLSVTSRQASSFGHSFESGSSNEPFSPQAMVSKKLYDSFFGGYRKPEVYEVEEDDKDEDSFENCEKGSYGSTVVKKTLIYESETVKFMDQSSEDFTPSVQIHEFRKMQPNKISSNLEGSYSPSIPQEFICSLTRKIFEEPVTLESGQTFERKAIKAWFQKGNRTCPVTGNTLECVFMPFTNLILKRLIDNWKTEDFKRLLDFASQAVQNSKELELKKRDETIVFKLQSLFASLKEEEKSTYAKHIISLGVFSFLFKRFELGNVEEKSHVLEILLNCIQADSSCIYKIARSVDRKILLELLHSKMVTPTTNAIVFLTELLSMKRRKDVTFFLSGLVGEDVYSTMHIVLMYLKNCFPIEKPLVAVLLLHFDLLVEPQKLGIYIKTAVNAIADALDAGLDDEKIQKKCCKALLILCGHFSTTGKIITDTTVLKQAGYKNGSSELKSPSYDEEDQQLDVTISSEDEEEERNEEFMINLLESLIGDGESPFLKTISRCLESRHLDLVRTCLITVTWLSSSLSKQYNAGLHLPAFLAVISQLKEILLNSELELKTLASMSLFNFSKISECRTLLKIMAQDMAPILHGLVDVIWTAKKLHAILM* 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3268 1001 Pfam U-box domain 528 598 IPR003613 GO:0004842|GO:0016567
Psa6g3268 1001 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 527 601 IPR013083 -
Psa6g3268 1001 SMART Ubox_2 531 595 IPR003613 GO:0004842|GO:0016567
Psa6g3268 1001 MobiDBLite consensus disorder prediction 59 89 - -
Psa6g3268 1001 PANTHER OS04G0584500 PROTEIN 515 1000 - -
Psa6g3268 1001 PANTHER OS04G0584500 PROTEIN 1 496 - -
Psa6g3268 1001 CDD RING-Ubox_PUB 532 573 IPR045210 -
Psa6g3268 1001 MobiDBLite consensus disorder prediction 15 139 - -
Psa6g3268 1001 ProSiteProfiles U-box domain profile. 527 602 IPR003613 GO:0004842|GO:0016567
Psa6g3268 1001 Coils Coil 148 168 - -
Psa6g3268 1001 PANTHER OS04G0584500 PROTEIN 515 1000 - -
Psa6g3268 1001 PANTHER OS04G0584500 PROTEIN 1 496 - -
Psa6g3268 1001 SUPERFAMILY ARM repeat 585 971 IPR016024 -
Psa6g3268 1001 SUPERFAMILY RING/U-box 521 598 - -
Psa6g3268 1001 MobiDBLite consensus disorder prediction 92 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3268 Psa-Chr6 282913903 282918049 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3268 527 611 U-box Gene Family AT1G76390 36.667 2.03e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3268 - - lja:Lj1g3v3329610.1 1241.87