Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3260 ATGGACATCCCCAAAGGGGTGAGCATCAAGGTGCACGCTAAGCTCATCGAGGTTGAAGGTCTACGTGGGAAACTGGTTCGTGATTTCAAGCATTTGAATCTTTATTTTCAGATTATTACTGATGAAAATAGGAAGAAGAAGCTGAAGGTTGAAGCTTGGTTTGGATCTAGGAAAACCTCTGCTGCTATTCGCACTGCTCTTAGTCATGTCGATAATTTGATCACTGGTGTTACTAAGGGGCATCGTTACAAGATGCGATTTGTGTGTGCTCATTTTCCGATTAATGCTAGTATCACTAACAGTAATACTGCTATCGAGATTCGTAATTTCCTTGGCGAAAAGAAGGTAAGGAAAGTGGATCTCCTTGAAGGAGTTAATGTTGTTCGATCTGAAAAGGTTAAGGATGAGTTGGTTTTGGATGGAAATGACATTGAACTTGTTTCCAGATCTTGTGCTCTTATTAACCAGAAATGCCATGTTAAGAAGAAAGATATCCGAAAGTTCCTTGATGGTATCTATGTTAGCGAGAAGGGGACAATAGCTGAAGAATAG 552 0.4022 MDIPKGVSIKVHAKLIEVEGLRGKLVRDFKHLNLYFQIITDENRKKKLKVEAWFGSRKTSAAIRTALSHVDNLITGVTKGHRYKMRFVCAHFPINASITNSNTAIEIRNFLGEKKVRKVDLLEGVNVVRSEKVKDELVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGTIAEE* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3260 183 ProSitePatterns Ribosomal protein L6 signature 2. 156 177 IPR002359 GO:0003735|GO:0005840|GO:0006412
Psa6g3260 183 PANTHER 60S RIBOSOMAL PROTEIN L9-LIKE 1 183 - -
Psa6g3260 183 Pfam Ribosomal protein L6 92 171 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Psa6g3260 183 Pfam Ribosomal protein L6 3 80 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Psa6g3260 183 Gene3D - 81 183 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Psa6g3260 183 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 180 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Psa6g3260 183 Gene3D - 1 80 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Psa6g3260 183 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 183 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Psa6g3260 183 SUPERFAMILY Ribosomal protein L6 2 80 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Psa6g3260 183 SUPERFAMILY Ribosomal protein L6 82 177 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3260 Psa-Chr6 281505591 281506372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3260 1 183 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 80.978 1.23e-106 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3260 K02940 - gmx:100306058 322.013