Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3257 ATGGAACCCAACAACGTCAACAGCTCCAACCTACTCACCTCACTCTTCGAGCACCAAACCGTTAGCCCCGTCACCGTCAACGCTTCTCCAGTTAACGGTGCGTTAGTAACTACCACCGATGGGTCCCACAGTAACCTTCATTCCGTTACGGATAATAAGAAGAAGCGAGGTAGGCCCAGGAAGTACGAGTCTCCACAAGAAGGACTCGCCGCTAGGAAAGCTGCAGCTGCAGCAGCGGCTGCCTCCGCCGCCGCTGCTTCTCCTGCTGCTGCGACGTCGTTTTCCTCTTTGAATCTCAACAAGCAGAAAAAGTTTCACTCCCCTTCTCTAGGTAATTTGAGAGAGAACTTCAATCTTCACATTGTTACTGTTCGTGCTGGTGAGGATATTGGCCAAAATATTATGTCGCTCATGCAAAAACATAGTAGGTGTGAGATGTGCATTTTGTCTGCATCTGGTTCCATCTCTAGTGCTACTCTTCGTCAGCCGGCAACCGCTGGAGGCAATATTACATATGAGGGTCGCTTTGATATTATTTCCCTTACTGGATCATATGTCCGTAATGAAAATGATGGTCGTTCTGGTGGTCTCAGTGTATGCTTAGCTCATTCTGATGGGCAACTTGTAGGTGGAAGCATTGCCGGACCCCTCAAAGCCGCTAGTCAAGTTCAGGTCATCGCCGGCACATTTTCTATTGAACCTAAGGACACTGGTGCTGGTATAAAAGGCAATACTTCTACCAGCAAGTTACCATCACCAGTTGGTGAATCCACACCGAGTTTAGGTTTCCGCCCAGCACTTAACCCTTCAAATGGGAATACAAACCCAGGAAACAAAGAGCATCAAGCTATTGGGGGAGGTCATTTCATGTCTCAGCAATATGGAGTAAACGTGGTTCCTTTCCATCCCTTGGATTGGGGAAGCCGTCCAGATTCTAGGAATACTGGTTTTGAACTGATAGGAAGAACAAGTCACGAAGCTCACCAGTCTCCAGAGAATGGGGCCTATTCCTGA 1014 0.4813 MEPNNVNSSNLLTSLFEHQTVSPVTVNASPVNGALVTTTDGSHSNLHSVTDNKKKRGRPRKYESPQEGLAARKAAAAAAAASAAAASPAAATSFSSLNLNKQKKFHSPSLGNLRENFNLHIVTVRAGEDIGQNIMSLMQKHSRCEMCILSASGSISSATLRQPATAGGNITYEGRFDIISLTGSYVRNENDGRSGGLSVCLAHSDGQLVGGSIAGPLKAASQVQVIAGTFSIEPKDTGAGIKGNTSTSKLPSPVGESTPSLGFRPALNPSNGNTNPGNKEHQAIGGGHFMSQQYGVNVVPFHPLDWGSRPDSRNTGFELIGRTSHEAHQSPENGAYS* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3257 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 29 331 IPR039605 GO:0003680
Psa6g3257 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 29 331 - -
Psa6g3257 337 Pfam Plants and Prokaryotes Conserved (PCC) domain 120 230 IPR005175 -
Psa6g3257 337 CDD DUF296 118 230 IPR005175 -
Psa6g3257 337 MobiDBLite consensus disorder prediction 47 67 - -
Psa6g3257 337 MobiDBLite consensus disorder prediction 36 69 - -
Psa6g3257 337 SUPERFAMILY AF0104/ALDC/Ptd012-like 116 230 - -
Psa6g3257 337 MobiDBLite consensus disorder prediction 240 255 - -
Psa6g3257 337 MobiDBLite consensus disorder prediction 237 262 - -
Psa6g3257 337 Gene3D - 118 242 - -
Psa6g3257 337 ProSiteProfiles PPC domain profile profile. 114 253 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3257 Psa-Chr6 281407322 281411745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3257 53 336 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 42.951 1.38e-54 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3257 - - gmx:100809675 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3257 6 281407322 281411745 Psa6g3257 6 281407322 281411745 ECH