Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3253 ATGACTGGTGATGTTACCATTGATCCCAATGCTTCTTGCTTGGTGATGACTACTGAAATCTGGCGAAGTATGCAATACAAAGGGTCTGAGGTCACTAGGGAGGTGGCTTGGATCATTTTTGACGAGGTGCATTACATGCGCGATCGAGAAAGAGGTGTGGTTTGGGAAGAGAGCATTGTCATGTCGCCAAAGAATGCTCGTTTTGTCTTCCTGTCTGCTACTGTCCCTAATGCCAAGGAATTTGCTGATTGGGTGGCAAAGGTGCACCAACAGCCTTGTCATATTGTTTATACAGATTACCGGCCAACTCCCCTTCAACATTATATTTCTCCTTCCGGAAGCGAGGGTCTATACTTAGTGGTAGATGAAAAGGGAAAGTTTCGCGAAGACAGTTTTCATAAAGCTTTGAATGCTCTTGTTCCCGCTGCTGATGGTGATAGGAAAAAAAGAAAATGCGAAGTGGCAAAAAGAATTGGTCGAGTTTCATCTACTGAGGATGCAAAACTTCAAGAAAGTTCTAGTGACACTTTGGAACTTCGTTTTTGGGCATCTTATCGAGGGCAGACTCTGGCAAGAACAGTACGTGGAATGATGTATTACAGGAGAGCTTTGGTGCTGCAGAGCTATCTAGAGAGCAGATCACTGGGAGTGGACAATTATTCTCAGAACAATTTCATTACAAGTCAAGGTTTTGAATCATCCCGAGAATCACGTGCACAACCAAACTACTTTGAGGACGCTGTCAGTGTTGGAGCATTCCCTGCATTTCAAAAAGGAATTCTTGTTTCTGCTTCTACTGGAAACTCGGTTTTTCCTCGAACGGCTTGCAACGTTGCTCCTTGGATCCTCACTCTTGCTGCTAGCACGTTAGATAGAGAATTCAGTTCAAATAACTACCTTGGCAACTCAAAAGTTTTGAAGGGTTTTTTCTCTAAATCCAATGAAAATGGAGTATTCTCATGGTTTGATACATGGAAGTTCAGCCACAGCATTGTTATCTGCACAATTGAAAACTTCACTGACAAAAGAGAAGAAAAATCCATAATAGTAAAGCAAGGTGGTGGTGTTGGAATGATACTTATTGACCATAATGCCAAAGAAGTCGGTTTTCAGTTGTCAGGCCATTCCGGCTTTGTGGCCCAGTCGCCTGCTGTACGAACGTGTAGGGCCTCCCTATTTCCATCTACAATGCTGCCAATGACGCATGCAGTGGAGCGAATGAGTTCTTTCAGAACTGAAACCATGTTGGACACAACTGCAATGGCTCTTTCAGCAATTGTTATTGCGAGTTACGTGGATTGGCCCAATTGCTTTGAAATGGATGCACAAACTGTTAGTTTGTTGTTGTCAAATGATGCTTGGATCGGATTCCTGCTAGATGAAGCTTCACGATTGATCACTGGCATGTTTGAAGTGTTAGCCACAAGTGTTGTATGCTTCATGACAGACTTTGGTGCATCCAGGAAAGTCGTGGAATTGGCTACCATAAATGGAGCAAAGTCTATGAAGGGTACCCCACACTGGATGTCACCTGAAGTTATTTTACAGACAGGATATACAACCTCTGCTGATATATGGAGTGTTGCATGCACTGTGATAGAGATGGCCACAGGAAAGCCTCCATGGAGTCAATAG 1635 0.4349 MTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTREVAWIIFDEVHYMRDRERGVVWEESIVMSPKNARFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTPLQHYISPSGSEGLYLVVDEKGKFREDSFHKALNALVPAADGDRKKRKCEVAKRIGRVSSTEDAKLQESSSDTLELRFWASYRGQTLARTVRGMMYYRRALVLQSYLESRSLGVDNYSQNNFITSQGFESSRESRAQPNYFEDAVSVGAFPAFQKGILVSASTGNSVFPRTACNVAPWILTLAASTLDREFSSNNYLGNSKVLKGFFSKSNENGVFSWFDTWKFSHSIVICTIENFTDKREEKSIIVKQGGGVGMILIDHNAKEVGFQLSGHSGFVAQSPAVRTCRASLFPSTMLPMTHAVERMSSFRTETMLDTTAMALSAIVIASYVDWPNCFEMDAQTVSLLLSNDAWIGFLLDEASRLITGMFEVLATSVVCFMTDFGASRKVVELATINGAKSMKGTPHWMSPEVILQTGYTTSADIWSVACTVIEMATGKPPWSQ* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3253 544 Gene3D - 291 403 - -
Psa6g3253 544 ProSiteProfiles Protein kinase domain profile. 242 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3253 544 Gene3D Transferase(Phosphotransferase) domain 1 457 544 - -
Psa6g3253 544 Pfam Protein kinase domain 481 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3253 544 Gene3D - 1 101 IPR027417 -
Psa6g3253 544 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 1 154 - -
Psa6g3253 544 Pfam 1,3-beta-glucan synthase component 171 224 IPR003440 GO:0000148|GO:0003843|GO:0006075|GO:0016020
Psa6g3253 544 SUPERFAMILY Protein kinase-like (PK-like) 476 543 IPR011009 -
Psa6g3253 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 86 IPR027417 -
Psa6g3253 544 PANTHER EXOSOME RNA HELICASE MTR4 1 154 - -
Psa6g3253 544 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 93 IPR014001 -
Psa6g3253 544 Gene3D - 102 191 IPR027417 -
Psa6g3253 544 Gene3D Peptidase S8/S53 domain 237 290 IPR036852 GO:0004252|GO:0006508
Psa6g3253 544 SUPERFAMILY Subtilisin-like 237 329 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3253 Psa-Chr6 281265821 281268616 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3253 472 544 MAP Kinase Kinase Kinase AT3G06030 74.324 6.76e-30 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Psa6g3253 Pkinase 5.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3253 K12598 - csv:101203071 297.36