Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3247 ATGCATTCATGTTACACTTACAGTTACGCCCACACCTACATCCCCTTCAAATTAAACCGTTTCGCTCCCCGAACCGCACCGGTTCGAGCGGCGGTCACTTCCCCGGAGAAGCGGACCAGAAAGAAGAAACAACCCAAAGATGACGACAATTCACTTGAAACCAGTCTCCGGTTCAGTTTCATGGAGGAGCTCATGAACCAGGCCAGGAACCGTAACTCAACCGGAGTTTCTCAAGTCATGTACGACATGATTGCCGCTGGTTTGAGTCTTGGCCCCAGGTCGTTTCACGGTTTGGTAGTGTCGTATGCTCTTAACGGGGATGAACAAGCAGCGATGGATTCGCTGAGGAGAGAGTTAGGTGCAGGGCTTCGACCGATTCACGAAACTTTTGTTGCATTGGTAAGATTGTTTGGGTCTAAAGGTCAAGCCACTAGAGGTTTAGAGATACTTGGAGCTATGGAAAAGTTAGATTATGATATTCGTCAAGCTTGGATTATTCTTATTGAGGAACTTGTTTGGAATAAGCATTTGGAAGATGCTAATAAAGTGTTCTTGAAGGGTGCTAAGGGTGGCCTCAGGGCTACAGATGAAGTTTATGATCTTTTAATCGAGGAAGACTGCAAAGCGGGAGACCATTCTAATGCTTTGGAAATTTCGTATGAAATGGAAGCTGCTGGACGAATGGCAACAACGTTCCATTTTAATTGCCTCCTTTCAGTGCAGGCTACCTGCGGAACACCTGAAATAGCTTTTACAACATTTGAGAACATGGAATATGGAGAAGATTATATGAAGCCGGATACAGAAACATACAATTGGGTCATTCAAGCGTATACTAGAGCTGATTCTTATGACAGAGTACAAGATGTCGCTGAGTTGCTTGGCATGATGGTTGAAGATCATAAGCGCATACAGCCAAATGTGAAAACCCATGCGCTGTTAGTGGAGTGTTTTACCAAGTACTGTGTAGTTCGAGAAGCTATCAGGCATTTCCGAGCACTTAAAAACTTTGAAGGGGGTATAAAAGTTCTACATAATGAAGGAAACTACGGAGATCCTCTTTCATTGTACCTTCGAGCATTGTGTCGGGAAGGAAGGATTATTGACTTGCTCGAAGCTTTAGAAGCTATGGCCAAAGATAATCAGCAAATTCCCCCACGGGCAATGATTTCGAGCAGAAAATACCGGACCTTAGTGAGCTCATGGATTGAACCTTTACAAAAGGAGGCCGAACTTGGTTATGAGATTGATTATATTGCTAGATATGTTGAAGAAGGTGGCCTTACTGGAGAGCGCAAACGGTGGGTGCCTCGAAGTGGTAAAACACCTCTAGATCCTGATGCTGACGGATTTATATATTCAAATCCAATAGAGACCTCCTTCAAACAAAGATGCCTTGAAGAGAGGAAGGTGTACCATATAAAGCTTCTGAAGAAGTTGCACTATGAAGGAATTTCAGCTTTAGGGGATGATGTATCTGAATCTGATTATGTTAGAGTTCTTGAGTGGCTAAAGAAAATCATAAAGGGGCCTGAGCAGAATGCTTTAAAACCTAAGGCTGCTAGTAAAATGCTTGTGCTTGAATTGAAGGAAGAACTAGAAGGACAAGGTTTGCCTACTGATGGAACCAGAAATGTTCTTTACCAGCGTGTTCAGAAAGCAAGGAGAATAAATCAATCTCGTGGTCGGCCGCTTTGGGTTCCTCCCATTCAAGAGGAGGAAGAAGAGGTGGATGAAGAGTTGGATGCATTGATTTCACGCATAAAGCTGGAGGAAGGAAATACAGAGTTTTGGAAACGCCGCTTCTTAGGAGAAGGCTTACCTGGTGCTCATGGAAATGCCATGATTGAAGGTACATCAGAGTCCACTGATGTTCAAGATTATATTGATGTTGTAGAGGATGATGCAAAAGAGACCGAAGATGATGAAGCAGATGATGATGATCAGGAAGTAGAACAGGCAGAAGAGGAAGTAGAACCAGTAGAGAACCAAGATGCAGAGAGGATAAAGGAAAAGGAAGTTGAAGCTAAAAAGCCCCTTCAAATGATTGGAGTCCAGCTGTTGAAAGATTCCGACCAACCCTCTGCCTCTTCTAAAAAGTCAAGAAGAAGAACAACTCGGAATATGGTTGAGGATGATGCAGATGATGATTGGTTTCCTTTGGACATATTTGAGGCATTTAAGGAAATGAGGAATCGTAGAGTGTTTGATGTATCAGACATGTACTCCTTAGCAGATGCTTGGGGATGGACATGGGAGAGAGAACTAAAGAGCAAGCCTCCTCATAGATGGTCACAGGAATGGGAAGTCGAGTTGGCAATCCAAGTTATGCAGAAGGTCATACAATTGGGAGGGATGCCAACTATTGGAGATTGTGCCGTGATCTTGCGTGCAGCTATAAAAGCACCTCTACCTTCAGCTTTCTTGACAATTTTGCAGACAACTCATGGCCTTGGCTATAAGTTTGGGAGACCGCTTTATGATGAGATCATATCTCTTTGCCTTGATCATGGGGAACTAGATGCCGCCGTTGCCGTTGTGGCAGACTTGGAGACAACGGGGATCTCGGTTTCAGACGAAACTCTGGACAGGGTAATTTCTGCTAAACTGGAGATTGATAATGCTTCAAATGATGACATGGATGCAGCAGGATTAAAAATAAAAATAGTTAGTGTTTCACCTCTAACAGAACCTTGTGCGGAATTTGCATGTGCAAATATGGAGAAAAATGTACATGCATTGTTTCTGATGTTGTTGATATTTACTCTTATTTTCTGTCTATCTGAAGGGCTTAATGCAGAGGGAAAATACCTTGTCGATATAAAAGGGAAATTGTTAGACAGATACAATCATCTTGAGAATTGGAATTCAAATGATTCAACGCCTTGTGGTTGGATTGGTGTCATTTGCAACAGTGACATCAATCCATTGGTTGAATCTCTTGACTTGCATGCAATGAATCTCTCAGGCTCTTTATCTTCCAGCATTGGTGGTTTGGTTCATTTACTTCACCTTAATTTATCTCAGAACTCTTTCTCTGGTTTTATACCAAAGGAAATTGGAAACTGCTTAAGTTTGCAGGTTCTTAGTCTCAACATTAATCAATTTGAAGGTCAAATTCCTGTCGAAATAGGCCGGCTTTCGAATTTAACAGAATTGCATCTTTCCAACAACCAGCTCTCAGGACCTTTTCCGGATGAAATTGGTAACCTTTCTTCACTTTTGATACTTACTGTTTACACAAATCATCTCAGCGGGTCTTTGCCGGCTACTATCGGGAACCTTAAAAGATTGATTCGATTTCGAGCCGGACAGAATATGATCTCAGGAAGTTTACCTCGAGAGATAGGTGGATGTGAAAGCTTAGAGTATCTTGGTTTAACTCAAAATCAGATAAGTGGTGAAATACCGAAAGAACTCGGACTACTCAAGAACTTGCAATGTTTGGTCCTTAGGGAAAATAATCTTCATGGCGCTATACCTAAAGAGCTTGGAAACTGTACAAATTTGGAGGTTCTTGCTCTCTATCAGAACAATCTTGTGGAAGAAATTCCAAAGGAGCTTGGAAACCTTGAAGTCCTAAAGAAACTATACCTTTACAGGAATGAGTTGACAGGGAATATTCCAAGGGAGATTGGAAACCTTTCTGTTGCAATTGAGATTGATTTTTCGGAGAATCTTCTTACAGGAGAGATACCGATCGAGTTGGTTAATATCAAAGGCTTGCAATTGCTTCATCTCTTCGAGAACAAACTAACCGGCGCAATTCCAAATGAGTTCACAACCTTGAAAAACCTAACTGAGCTCGATCTCTCTATCAATTACCTCAACGGTACTATTCCGATCGGTATTCAGGATTTGACCAAACTGTACTCATTGCAACTCTTCAACAACTCATTAAGTGGTAGAATTCCTTATGCACTTGGAGCAAATAGTCCACTTTGGGTGCTTGATTTGTCATTCAACAACTTAGTTGGAAGAATTCCAATTCATCTTTGCCAACAGGCTAAATTGATGATGTTGAACTTAGGATCAAACAAACTCGCCGGAAATATACCTTATAGAATTACAAGCTGCAAGTCTTTGGTGTATCTTCGCCTCTTCGGTAACAATTTGAGGGGCAAGTTTCCTTCGAATTTATGTGAGCTTGTGAATCTTTCTACAGTTGAGTTGGAACAGAATGAATTCAATGGCCCCATTCCTTCACAAATCGGTCACTTCCAAAATTTGCAAAGACTTCACCTTTCTAACAACCATTTTTCGTCTGAATTGCCGAAAGAAATTGGTAACCTGTCTCAGTTGGTATCCTTTAATGTCTCATCAAATTATCTTTTTGGTAGACTGCCTATGGAACTTTTCAACTGCAGGAAGCTCCAAAGACTTGACCTCAGCAACAACGGCTTCGTAGGTACTTTATCAGGTGAGATCGGAACTCTTTTACAGTTAGAGCTTCTAAGACTCTCAAATAACAATTTTTCTAGTAAAATTCCATTGGAAGTCGGAAAACTCTTGCGGTTGACCGAACTACAAATGAGCCAAAACTCATTTTGTGGTTACATTCCACAAGAGTTAGGTGCACTCGCATCCTTGCAGATTGCACTTAATCTCAGCTATAATAAACTTTCAGGCCAAATACCTTCTCAACTTGGGAATCTTATTATGCTAGAATCTCTCCAACTCAACAACAATCACTTGAGCGCCGAAATTCCAAACTCCTTTAGCAGACTTTCAAGTTTACTTTCTTTCAACTTTTCATACAACGATCTTTTCGGCCCTTTACCTTCTTTACCTCTCTTTCAAAACTCCACATTCAGCTGCTTTTCGGGTAACAAAGGACTATGTGGAGGACTCCTTGTCCCTTGTCAAAGTTCAACATCACATTCCCCTCCAAATAAACTAGGAAAAATTCTAGCTATAGTTGCAGCTATTGTTAGTGGAGTTTCACTGATTTTAATTCTGGTTATCATATATCTAATGAAAAATCTCACTGTGCCACACCAAGATATAGATAAACCGAATTCTCCAAATGTTTCAAACATGTACTTTTTTCCAAACGAGGAGTTGAATTTCCAAGACGTGGTTGTAGCTACTGAAGATTTTCATTCCAAATATGAAATTGGAAAAGGTGGCAGTGGAACTGTGTATAGAGCAGATATATCAAATGATCATAATCATATAAACACAATTGCTGTAAAGAGACTTACATCAAACAGTAACAGCATTGATTTAAACGGTTGCTTCCGCGCTGAAATCTTAACTTTGGGCAAAATAAGGCACAGAAATATTGTGAAATTATACGGTTTCTGCAACTATAGCGGCTCTAATATGCTACTTTATGAACACATGGAAAAGGGTAGTTTAGGAGAGTTACTTCATGGAGAATCTTCCTCTAGTCTTGATTGGTATTCCAGGTTTAGGATTGCTCTGGGAACTGCACAAGGACTATCTTATTTGCACCATGATTGCAAGCCGAGAATTATCCACCGGGATATCAAGTCCAATAACATACTTATCGACCATGAATTCGAAGCTCATGTTGGTGATTTCGGTTTGGCTAAGCTTATTGATATCTCAACGTCTAAATCAGTGTCTGCAGTTGTAGGCTCTTATGGCTACATTGCCCCTGAGTATGCATACACAATGAAAGTGACAGAAAAATGTGATGTCTACAGCTATGGAGTAGTCCTATTGGAGTTACTAACAGGCAAGAAGCCAATCCAGTCATTGGATCAAGGTGGTGGTGATCTTGTAACATGGGTGACAAATCATATCAACAAATCTTCATTGAAACTAGACATCATAGATGCAAAATTGGACCTACTAGATGAAATTGATGTTGCTCAAATATTTGATGTCTTGAAAATTTCTTTACTATGCACCGACACTTGTCCTTCTAGACGACCAACCATGCGTAAAATTGTTGCAATGCTTACAAGTTCTAGTAAAAGGAAAGAGCAATCTTTGTTCTCTCCATGTCATGAATCAACTCACATTGAAGAATGA 6003 0.4071 MHSCYTYSYAHTYIPFKLNRFAPRTAPVRAAVTSPEKRTRKKKQPKDDDNSLETSLRFSFMEELMNQARNRNSTGVSQVMYDMIAAGLSLGPRSFHGLVVSYALNGDEQAAMDSLRRELGAGLRPIHETFVALVRLFGSKGQATRGLEILGAMEKLDYDIRQAWIILIEELVWNKHLEDANKVFLKGAKGGLRATDEVYDLLIEEDCKAGDHSNALEISYEMEAAGRMATTFHFNCLLSVQATCGTPEIAFTTFENMEYGEDYMKPDTETYNWVIQAYTRADSYDRVQDVAELLGMMVEDHKRIQPNVKTHALLVECFTKYCVVREAIRHFRALKNFEGGIKVLHNEGNYGDPLSLYLRALCREGRIIDLLEALEAMAKDNQQIPPRAMISSRKYRTLVSSWIEPLQKEAELGYEIDYIARYVEEGGLTGERKRWVPRSGKTPLDPDADGFIYSNPIETSFKQRCLEERKVYHIKLLKKLHYEGISALGDDVSESDYVRVLEWLKKIIKGPEQNALKPKAASKMLVLELKEELEGQGLPTDGTRNVLYQRVQKARRINQSRGRPLWVPPIQEEEEEVDEELDALISRIKLEEGNTEFWKRRFLGEGLPGAHGNAMIEGTSESTDVQDYIDVVEDDAKETEDDEADDDDQEVEQAEEEVEPVENQDAERIKEKEVEAKKPLQMIGVQLLKDSDQPSASSKKSRRRTTRNMVEDDADDDWFPLDIFEAFKEMRNRRVFDVSDMYSLADAWGWTWERELKSKPPHRWSQEWEVELAIQVMQKVIQLGGMPTIGDCAVILRAAIKAPLPSAFLTILQTTHGLGYKFGRPLYDEIISLCLDHGELDAAVAVVADLETTGISVSDETLDRVISAKLEIDNASNDDMDAAGLKIKIVSVSPLTEPCAEFACANMEKNVHALFLMLLIFTLIFCLSEGLNAEGKYLVDIKGKLLDRYNHLENWNSNDSTPCGWIGVICNSDINPLVESLDLHAMNLSGSLSSSIGGLVHLLHLNLSQNSFSGFIPKEIGNCLSLQVLSLNINQFEGQIPVEIGRLSNLTELHLSNNQLSGPFPDEIGNLSSLLILTVYTNHLSGSLPATIGNLKRLIRFRAGQNMISGSLPREIGGCESLEYLGLTQNQISGEIPKELGLLKNLQCLVLRENNLHGAIPKELGNCTNLEVLALYQNNLVEEIPKELGNLEVLKKLYLYRNELTGNIPREIGNLSVAIEIDFSENLLTGEIPIELVNIKGLQLLHLFENKLTGAIPNEFTTLKNLTELDLSINYLNGTIPIGIQDLTKLYSLQLFNNSLSGRIPYALGANSPLWVLDLSFNNLVGRIPIHLCQQAKLMMLNLGSNKLAGNIPYRITSCKSLVYLRLFGNNLRGKFPSNLCELVNLSTVELEQNEFNGPIPSQIGHFQNLQRLHLSNNHFSSELPKEIGNLSQLVSFNVSSNYLFGRLPMELFNCRKLQRLDLSNNGFVGTLSGEIGTLLQLELLRLSNNNFSSKIPLEVGKLLRLTELQMSQNSFCGYIPQELGALASLQIALNLSYNKLSGQIPSQLGNLIMLESLQLNNNHLSAEIPNSFSRLSSLLSFNFSYNDLFGPLPSLPLFQNSTFSCFSGNKGLCGGLLVPCQSSTSHSPPNKLGKILAIVAAIVSGVSLILILVIIYLMKNLTVPHQDIDKPNSPNVSNMYFFPNEELNFQDVVVATEDFHSKYEIGKGGSGTVYRADISNDHNHINTIAVKRLTSNSNSIDLNGCFRAEILTLGKIRHRNIVKLYGFCNYSGSNMLLYEHMEKGSLGELLHGESSSSLDWYSRFRIALGTAQGLSYLHHDCKPRIIHRDIKSNNILIDHEFEAHVGDFGLAKLIDISTSKSVSAVVGSYGYIAPEYAYTMKVTEKCDVYSYGVVLLELLTGKKPIQSLDQGGGDLVTWVTNHINKSSLKLDIIDAKLDLLDEIDVAQIFDVLKISLLCTDTCPSRRPTMRKIVAMLTSSSKRKEQSLFSPCHESTHIEE* 2001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3247 2000 SUPERFAMILY Protein kinase-like (PK-like) 1674 1977 IPR011009 -
Psa6g3247 2000 SMART LRR_typ_2 1479 1503 IPR003591 -
Psa6g3247 2000 SMART LRR_typ_2 1407 1431 IPR003591 -
Psa6g3247 2000 SMART LRR_typ_2 1143 1167 IPR003591 -
Psa6g3247 2000 SMART LRR_typ_2 1263 1286 IPR003591 -
Psa6g3247 2000 SMART LRR_typ_2 1287 1311 IPR003591 -
Psa6g3247 2000 SMART LRR_typ_2 1191 1215 IPR003591 -
Psa6g3247 2000 SMART LRR_typ_2 1552 1576 IPR003591 -
Psa6g3247 2000 SMART LRR_typ_2 1047 1071 IPR003591 -
Psa6g3247 2000 SMART LRR_typ_2 999 1023 IPR003591 -
Psa6g3247 2000 Gene3D Phosphorylase Kinase; domain 1 1666 1781 - -
Psa6g3247 2000 SUPERFAMILY RNI-like 1256 1591 - -
Psa6g3247 2000 SUPERFAMILY RNI-like 980 1334 - -
Psa6g3247 2000 Gene3D Ribonuclease Inhibitor 1082 1332 IPR032675 -
Psa6g3247 2000 Gene3D Ribonuclease Inhibitor 1333 1625 IPR032675 -
Psa6g3247 2000 MobiDBLite consensus disorder prediction 34 52 - -
Psa6g3247 2000 Gene3D Transferase(Phosphotransferase) domain 1 1782 1996 - -
Psa6g3247 2000 SUPERFAMILY SAP domain 521 558 IPR036361 -
Psa6g3247 2000 Coils Coil 637 664 - -
Psa6g3247 2000 Gene3D Tetratricopeptide repeat domain 39 209 IPR011990 GO:0005515
Psa6g3247 2000 ProSiteProfiles SAP motif profile. 521 555 IPR003034 -
Psa6g3247 2000 Pfam Protein kinase domain 1700 1974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3247 2000 Gene3D SAP domain 509 564 IPR036361 -
Psa6g3247 2000 ProSitePatterns Protein kinases ATP-binding region signature. 1706 1732 IPR017441 GO:0005524
Psa6g3247 2000 PANTHER LRR RECEPTOR-LIKE KINASE 914 1989 - -
Psa6g3247 2000 SMART serkin_6 1700 1958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3247 2000 MobiDBLite consensus disorder prediction 29 52 - -
Psa6g3247 2000 MobiDBLite consensus disorder prediction 635 708 - -
Psa6g3247 2000 Gene3D Tetratricopeptide repeat domain 210 404 IPR011990 GO:0005515
Psa6g3247 2000 Gene3D Ribonuclease Inhibitor 930 1081 IPR032675 -
Psa6g3247 2000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1826 1838 IPR008271 GO:0004672|GO:0006468
Psa6g3247 2000 ProSiteProfiles Protein kinase domain profile. 1700 1989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3247 2000 SMART sap_9 521 555 IPR003034 -
Psa6g3247 2000 MobiDBLite consensus disorder prediction 663 678 - -
Psa6g3247 2000 Pfam Leucine rich repeat N-terminal domain 932 971 IPR013210 -
Psa6g3247 2000 MobiDBLite consensus disorder prediction 635 662 - -
Psa6g3247 2000 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 914 1989 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3247 Psa-Chr6 280651138 280664484 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3247 956 1978 Receptor kinase-like Gene Family AT1G17750 39.443 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa6g3247 Pkinase 8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3247 - - adu:107465566 1496.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3247 6 280651138 280664484 Psa6g3247 6 280651138 280664484 ECH