Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3244 ATGAAAAAGGAATCAGAAGTAAAAAAGGCACGATCAAGAGGAAAAGGAGGACCAGAGAATGCATTATGTAGTTACAAAGGAGTGAGACAAAGGACTTGGGGAAAATGGGTTGCTGAAATAAGAGAACCCAAACGTGGTGCTAGGCTTTGGCTAGGAACTTTCAACACTTGTATTGAAGCAGCACTTGCTTATGATGATGCTGCTACAAGGCTATATGGCGAATCTGCTAAGCTCAATTTGGCACCATCACATGGTAGTTCTACAACAACAAGTATAGGAGTTGACCAGAATTTGATTTTTCCTACACAATCTACTGATAACAACTGCATTGAAGAGATTTCAAATGATAAGAATAATGAGGTGTTGTGTGAGACTGATTTGGACTTTGAACCACTAAGTATTCCATGGAGTACTAGTGACTTTATTGTGGATGATTTCAAGGATTGGGATCCATCATTGCTAGAGGTTTAA 471 0.3907 MKKESEVKKARSRGKGGPENALCSYKGVRQRTWGKWVAEIREPKRGARLWLGTFNTCIEAALAYDDAATRLYGESAKLNLAPSHGSSTTTSIGVDQNLIFPTQSTDNNCIEEISNDKNNEVLCETDLDFEPLSIPWSTSDFIVDDFKDWDPSLLEV* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3244 156 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 93 - -
Psa6g3244 156 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Psa6g3244 156 CDD AP2 23 83 IPR001471 GO:0003700|GO:0006355
Psa6g3244 156 Pfam AP2 domain 23 73 IPR001471 GO:0003700|GO:0006355
Psa6g3244 156 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Psa6g3244 156 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Psa6g3244 156 SUPERFAMILY DNA-binding domain 24 81 IPR016177 GO:0003677
Psa6g3244 156 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 93 - -
Psa6g3244 156 Gene3D AP2/ERF domain 24 81 IPR036955 GO:0003700|GO:0006355
Psa6g3244 156 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3244 Psa-Chr6 280488223 280489017 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3244 4 83 AP2-EREBP Transcription Factor Family AT1G75490 71.250 1.04e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa6g3244 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3244 - - mtr:MTR_1g079630 177.563