Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3231 ATGAGAGCAACCGAACATGTTAAATCAATTTTGGGTGATCCAAATGTTATGGTTCCTGTTGGTGGATGCTACAGGCTTATAGACATTCCAATGAGCAACTGCATCAACAGCGGGATCAACAAAGTATTTGTATTGACACAGTTCAACTCAGCATCCCTTAACCATCATATCTCTCGCACCTATTTTGGAAATGGCATCAACTTTGGAGATGGATACGTAGAGGTTATTGCTGATAATGTTGGTGATAATGTTGGTGATATTGCCGGTATGGGATCCGATCTATTTGGTTCATATGCAGAGGCATCTTGTGCTGCCCTTGTTGTTGCTTCCATCTCTTCTTTTGGGATAAATCATGAGTTCACTGCCATGTTGTTCCCTCTCATCATCAGTTCTGTGGGCTCCTTTTGGATAGCACTCCCATCTACCTTCACATCTTCAATTTTGGAGAGCAAAAGTTGTCAAGAACTGGCAGCTATTCTTGTGTGTTTCTGTTGGTCTTTGGCAGGGCTTATCATTGATTTGTTACTGAATACTATACAGCAATGCATACAGATTGTTGCTGATTCCTGCAGGACTGGTGCTGCTACAAAATGTTATCTTTGGTCTTGCCTTGGGATACAAGTCTGTTATCATTCCAATTTTTTCATTGCAATTAGTATTTTTGGAAGTTTCAGTTTTGTTGCTATGTATGGTGTTGCTGTTGATGCACTTGGAATGTTGAGTACTATAGCAACCGGATTAGCCATCGATGCATATGGTCCAATCAGTGACAATGCCGGAGGTATTGCTGAGCTGGCTGGAATGAGTCACAGAATTCGTGAGAGAACCGATGCTCTTGATGCTGCAGGAAACACAACTGCTGCCATTGGAAAGGGTTTGCTATTGGTTCTGCCGCCCTTGTGTCTTTGGCCCTTTTTGGTGCTTTGTGAGCCGTGCTGGTGTTACAACCGTCGATGTCCTGACTCCCAAGAGTGTCGGAAGTGCAGATTGAAGATGGTTGAGGAAGTTCGCAGGCAATTCAACACGATTCCTGGATTGATGGAGGGAACTGCGAAACCTGACTATGCCACATGTGTGACAATCTCCACCGACGCTTCCATTAAAGAAATGATCCACCTGATGCCATCTCTGCATCCAACACTGGCGGTGCTTGGGACAATGCCAAGAAGCACACCTTCACATTCAAAAGCAACTTCAGAAGCAATGCGAGCTGCTACCGAGGCTGCAAAAGCTGCTACCGAGACTGCACAAAGGATGGAGAGGGAGATGAATGCTTGGAAGGAATTTATGATGAAGAAATTTGACACTTCAACTTTTGTATCACATTCTCATCATTATGATGACGATTTGGATGATCAATCATTAGATGAATTGATCTTGTACTTTTAG 1389 0.4341 MRATEHVKSILGDPNVMVPVGGCYRLIDIPMSNCINSGINKVFVLTQFNSASLNHHISRTYFGNGINFGDGYVEVIADNVGDNVGDIAGMGSDLFGSYAEASCAALVVASISSFGINHEFTAMLFPLIISSVGSFWIALPSTFTSSILESKSCQELAAILVCFCWSLAGLIIDLLLNTIQQCIQIVADSCRTGAATKCYLWSCLGIQVCYHSNFFIAISIFGSFSFVAMYGVAVDALGMLSTIATGLAIDAYGPISDNAGGIAELAGMSHRIRERTDALDAAGNTTAAIGKGLLLVLPPLCLWPFLVLCEPCWCYNRRCPDSQECRKCRLKMVEEVRRQFNTIPGLMEGTAKPDYATCVTISTDASIKEMIHLMPSLHPTLAVLGTMPRSTPSHSKATSEAMRAATEAAKAATETAQRMEREMNAWKEFMMKKFDTSTFVSHSHHYDDDLDDQSLDELILYF* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3231 462 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 10 109 IPR029044 -
Psa6g3231 462 Pfam Inorganic H+ pyrophosphatase 75 145 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Psa6g3231 462 Pfam Inorganic H+ pyrophosphatase 330 373 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Psa6g3231 462 Pfam Inorganic H+ pyrophosphatase 167 294 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Psa6g3231 462 SUPERFAMILY Nucleotide-diphospho-sugar transferases 14 77 IPR029044 -
Psa6g3231 462 Coils Coil 402 422 - -
Psa6g3231 462 Pfam Nucleotidyl transferase 17 63 IPR005835 GO:0009058|GO:0016779
Psa6g3231 462 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 74 133 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Psa6g3231 462 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 136 294 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Psa6g3231 462 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 328 374 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Psa6g3231 462 PANTHER PYROPHOSPHATE-ENERGISED PROTON PUMP, PYRIDOXAL PHOSPHATE-DEPENDENT TRANSFERASE-RELATED 74 133 - -
Psa6g3231 462 PANTHER PYROPHOSPHATE-ENERGISED PROTON PUMP, PYRIDOXAL PHOSPHATE-DEPENDENT TRANSFERASE-RELATED 328 374 - -
Psa6g3231 462 PANTHER PYROPHOSPHATE-ENERGISED PROTON PUMP, PYRIDOXAL PHOSPHATE-DEPENDENT TRANSFERASE-RELATED 136 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3231 Psa-Chr6 278650857 278654420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3231 75 357 Primary Pumps ATPases AT1G15690 53.221 2.49e-99 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3231 K23025 - sspl:121799915 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3231 6 278650857 278654420 Psa6g3231 6 278650857 278654420 ECH