Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3229 ATGTCAAACAACCAAGAACAGACATTTGCATTGAAGGACAAGTTACGTGAACTTGTTAATACTATCGTTGAAGGCGATGATTTCAATCTGCATGCTGCTGATGAAGCCATCACTGCACTTTCTGTTCTCAGGGACTTGAAATCTAGTGCTTCTTTCTCAAGTAAATTCGATCGTTTATCTGTTCCTGTTCCTCCGCAGTTTCGATGCCCCATCTCAGGTCTCATCATGACTGATCCTGTTATCTTGGCCAATGGACAGACTTATGATAGACCATTCATTCAGAAGTGGCTGAATGAAGTCCATAGAGAATGCCCTCAAACTCAGCATGTTCTCTCTCATTCCATCCTTTCTCCTAATTATTTGGTTCAAGACATGATTTCAAGGTGGTGTAAGGAGCATGGAGTTGAGCTACCAATGCCTGTTGGGGAACTTGACAATGGAGAACCAACCGAAGCGCATAAGTATCGTTTACGGTCATTGCTTCATAAACTGTCATTATCTGCATTGGATCAAAAAGAAGCTGCGAGAGAGCTTCGGCTTTTAGCAAAGCAAATGCCTCCGTTTCGAACACTCTTTGGTGACTCAGAAGTGATTAAAAAACTGCTTAGTCCTTTATCAAAAGGTGTGGCTTGTATAGACCCGGAACTCCACGAGGACTTGATCACGGCTGTTCTCAATCTCTCAATCGACGATAACAATAAGAGAGTTTTCGTAGAGGATGAAAAGCTTATCACCTTTATTATCGATTCGTTGAAATCAGGAACTGTTCAAACAAAAAGCAATGCAGCAGCAGCAATTTTTTCATTATCAGCACCTGATATCAACAAACAGATCATTGGAAAAACCGGTGCGATTAAATATTTGGTTGATCTTTTAGAAAAGGGACATCCGTCATCAATGAAAGACGCTGCTTCGGCTCTATTCAATCTATGTATTGCACATGAAAATAAAGCGAAAACAGTTCGAGAAGGCGTGGTTCAGGTTATTCTCAGCAAGATCATCGTGGACCATGTTCTAGTAGACGAATTTTTGGCCTTATTGGCACTTCTCTCCAGCCATTCCAAGGCTGTTGCCGCATTGGGAAGTCACGGCGCTGTCCCTTTCTTTATGGATATTTTAAGAGATAGCAACATTTCGGATCGCAGCAAGGAGAATTGCGTTGCAATCTTGTACATAATATTTTTCAATGATAAAACAAAGAGGAAGGAAATTAGAGATGATGAAATATCCAATGGTACATTGGCTAAGCTTGCAGAATGTGGAACTTCAAGAGCTAAGAGGAAAGCTTGTGGTATTCTTGATAGGCTCAAGATAGCTCAATCCTCAAAGCACACCACTTAA 1341 0.4109 MSNNQEQTFALKDKLRELVNTIVEGDDFNLHAADEAITALSVLRDLKSSASFSSKFDRLSVPVPPQFRCPISGLIMTDPVILANGQTYDRPFIQKWLNEVHRECPQTQHVLSHSILSPNYLVQDMISRWCKEHGVELPMPVGELDNGEPTEAHKYRLRSLLHKLSLSALDQKEAARELRLLAKQMPPFRTLFGDSEVIKKLLSPLSKGVACIDPELHEDLITAVLNLSIDDNNKRVFVEDEKLITFIIDSLKSGTVQTKSNAAAAIFSLSAPDINKQIIGKTGAIKYLVDLLEKGHPSSMKDAASALFNLCIAHENKAKTVREGVVQVILSKIIVDHVLVDEFLALLALLSSHSKAVAALGSHGAVPFFMDILRDSNISDRSKENCVAILYIIFFNDKTKRKEIRDDEISNGTLAKLAECGTSRAKRKACGILDRLKIAQSSKHTT* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3229 446 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 441 - -
Psa6g3229 446 Gene3D - 158 443 IPR011989 -
Psa6g3229 446 Pfam Armadillo/beta-catenin-like repeat 275 311 IPR000225 GO:0005515
Psa6g3229 446 ProSiteProfiles U-box domain profile. 62 136 IPR003613 GO:0004842|GO:0016567
Psa6g3229 446 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 283 325 IPR000225 GO:0005515
Psa6g3229 446 CDD RING-Ubox_PUB 67 108 IPR045210 -
Psa6g3229 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 136 IPR013083 -
Psa6g3229 446 SUPERFAMILY RING/U-box 51 137 - -
Psa6g3229 446 SMART Ubox_2 66 129 IPR003613 GO:0004842|GO:0016567
Psa6g3229 446 Pfam U-box domain 63 133 IPR003613 GO:0004842|GO:0016567
Psa6g3229 446 SUPERFAMILY ARM repeat 168 436 IPR016024 -
Psa6g3229 446 SMART arm_5 271 312 IPR000225 GO:0005515
Psa6g3229 446 SMART arm_5 353 395 IPR000225 GO:0005515
Psa6g3229 446 PANTHER U BOX DOMAIN-CONTAINING 5 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3229 Psa-Chr6 278563109 278565185 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3229 125 445 U-box Gene Family AT3G07360 49.544 1.06e-93 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3229 - - gmx:100806132 530.406