Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3228 ATGAACTGCTTTCCGTGTTGTGGCCCTCAAAAAAACAAGCAAAGTAATAGTAAGAGGGAGCATGGTTCTACAACACAACAGGAAGTTCCTTCTGCGTCAAAAGCACCCGACATGAAGAAACAAAGGGGAGATGAAGGAGACGCGACGAATATTAACGCGCAAAATTACACTTTTCGTGAGTTAGCGACAGCGACAAAGAATTTCCGACAGGAATGTCTTCTTGGTGAAGGAGGCTATGGAAGAGTCTATAAAGGGGTTATTCCTGCAACTGGGCAGGCCGTGGCCGTGAAGCAACTCGACAGACATGGGACAGAAAACAGCAAGGATTTTCTGTATGAAGTTTCTCTGCTGAGTCATGTTAATCATGAAAATCTTGTTAAACTCATTGGTTATTGCGCCGATGGCGAGCAACGTCTTTTGGTATATGAATACTATCCTGCCTCTACTCTTGAAGACCGTCTTCTTGGGAATAAAACGGATGAACCGCCGTTGAATTGGTTTGACAGAATGAAAGTAGCAGCAGGTGCATCTAAAGGACTAGAATACTTGCATGATAATGCCAATCCACCAGTTATATTCCGTGACTTGAAAACATGCAACATCTTGTTGGGGAATGAATCTAATAATCTTAATAATGCAAAACTATCTGATTTTGGATTGGCCAAGCTTTGTGGTGCAGACAAGATGAACAATGCACCTCCAAGAGTTATGGGTACATATGGTTATTGTGCTCCTGAATATACAAGAACAGGTCAAGTTTCCATGAAATCAGATGTATACAGTTTTGGAGTTGTCTTGCTTGAGCTTATCACTGGTCGACGTGCCGTTGATACCACAAAGCCTAACGATGAGCAAAATCTAGTTTCATGGGCACAACCCTTATTTAGGGACCCGAAAAAGTATCCAGATATGGCGGATCCACTTCTCAATAAACATTTTCCAGAAAAGGATCTTAATCAAGCAGTTGCGATAGCCGCAATGTGCTTACAGGAGGAGCCAGAAGCCCGTCCTTTGATAGGTGACGTTGTAACCGCTCTGAGTTTTCTATCGACGGCTCCAACGGAACCTTTTCCACCGCCCTCGCTTCCCGCTGCCACCTCGGTCTCAAGGCATAGTACTGCTACTGAAAGCGAATATAGTGAGAGTGAATCAGAAGAAGAAACTTCAGATGATGAAGGCACTGACAATGAATATGACAGTAGTGCTCAAAATCACGGTGCAGCAAGTGCAAAACATAAAGAAAATGATGTTTCAAGCCAATCTAAGAAAAGGGCAACTTCGAAGAAATCGAGCCGAAAAAGCAGCACAAGATCAAGGAATGAAACTACTAAACCAAGCCAAAAAAGCAGTAGAAAATCTTCCACCAAAGGAAAATCATCTGGTAAAGTTTCGAGTCGCGCGGAATCGGAAGATAGAAGCATGATTTCGTCTCATAGAACTGCCTCAAGCCAATATACAGGCAGCAGTATGTCTGATCGTAGCAGCAGCAGAGGAAGTGGCAGTATTCGCTCGGATACTAACGGTAGCAGAAGGACAGAAGAGAGCATGCGTTTAGCCATGGAATCTGGTGATGAGGGAACCGGTCCTCCTTTCGATCGTACTGGTAGCAGTGAATCAGATCGGCGATGA 1629 0.4395 MNCFPCCGPQKNKQSNSKREHGSTTQQEVPSASKAPDMKKQRGDEGDATNINAQNYTFRELATATKNFRQECLLGEGGYGRVYKGVIPATGQAVAVKQLDRHGTENSKDFLYEVSLLSHVNHENLVKLIGYCADGEQRLLVYEYYPASTLEDRLLGNKTDEPPLNWFDRMKVAAGASKGLEYLHDNANPPVIFRDLKTCNILLGNESNNLNNAKLSDFGLAKLCGADKMNNAPPRVMGTYGYCAPEYTRTGQVSMKSDVYSFGVVLLELITGRRAVDTTKPNDEQNLVSWAQPLFRDPKKYPDMADPLLNKHFPEKDLNQAVAIAAMCLQEEPEARPLIGDVVTALSFLSTAPTEPFPPPSLPAATSVSRHSTATESEYSESESEEETSDDEGTDNEYDSSAQNHGAASAKHKENDVSSQSKKRATSKKSSRKSSTRSRNETTKPSQKSSRKSSTKGKSSGKVSSRAESEDRSMISSHRTASSQYTGSSMSDRSSSRGSGSIRSDTNGSRRTEESMRLAMESGDEGTGPPFDRTGSSESDRR* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3228 542 SUPERFAMILY Protein kinase-like (PK-like) 54 386 IPR011009 -
Psa6g3228 542 MobiDBLite consensus disorder prediction 476 506 - -
Psa6g3228 542 MobiDBLite consensus disorder prediction 379 397 - -
Psa6g3228 542 Pfam Protein kinase domain 70 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3228 542 PANTHER OS07G0668900 PROTEIN 1 453 - -
Psa6g3228 542 PANTHER RECEPTOR-LIKE KINASE LIP1 1 453 - -
Psa6g3228 542 MobiDBLite consensus disorder prediction 440 462 - -
Psa6g3228 542 MobiDBLite consensus disorder prediction 7 32 - -
Psa6g3228 542 MobiDBLite consensus disorder prediction 357 542 - -
Psa6g3228 542 Gene3D Transferase(Phosphotransferase) domain 1 146 351 - -
Psa6g3228 542 ProSitePatterns Protein kinases ATP-binding region signature. 74 97 IPR017441 GO:0005524
Psa6g3228 542 ProSiteProfiles Protein kinase domain profile. 68 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3228 542 MobiDBLite consensus disorder prediction 409 423 - -
Psa6g3228 542 Gene3D Phosphorylase Kinase; domain 1 38 144 - -
Psa6g3228 542 MobiDBLite consensus disorder prediction 1 49 - -
Psa6g3228 542 SMART serkin_6 68 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3228 Psa-Chr6 278560295 278562683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3228 1 386 Glycoside Hydrolase AT3G07070 56.328 3.27e-153 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Psa6g3228 Pkinase 8.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3228 - - lang:109335196 547.354