Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3210 ATGGCAGATTCCGAGAGTCCAGCTGGCGGTGGCCACGACCACGAGAGTGGCGGCGAACAAAGTCCACGTGGCTCTTCCTCTGCTGCGCGTGAACAAGATCGTTTCTTGCCTATAGCTAACATTAGCAGGATCATGAAAAAGGCTTTGCCTTCCAATGGAAAGATTGCTAAGGATGCTAAAGATACAATGCAGGAATGTGTCTCGGAATTCATCAGTTTTATTACCAGCGAGGCGAGTGAGAAATGCCAGAAAGAGAAGAGAAAGACCATTAATGGAGATGATTTGTTATGGGCAATGGCTACTTTAGGTTTTGAAGACTATATAGAACCGCTTAAGGTGTACCTAGCAAGATACAGAGAGGTAATTTCACTATCTTTTTTTTTCTCATTTGGTTAA 396 0.4369 MADSESPAGGGHDHESGGEQSPRGSSSAAREQDRFLPIANISRIMKKALPSNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYREVISLSFFFSFG* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3210 131 ProSitePatterns NF-YB/HAP3 subunit signature. 66 82 IPR003956 GO:0005634|GO:0006355|GO:0043565
Psa6g3210 131 SUPERFAMILY Histone-fold 32 122 IPR009072 GO:0046982
Psa6g3210 131 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-8 1 124 - -
Psa6g3210 131 MobiDBLite consensus disorder prediction 1 31 - -
Psa6g3210 131 PRINTS CCAAT-binding transcription factor subunit A signature 63 81 - -
Psa6g3210 131 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Psa6g3210 131 PRINTS CCAAT-binding transcription factor subunit A signature 101 119 - -
Psa6g3210 131 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 124 IPR027113 GO:0001228|GO:0006355|GO:0016602
Psa6g3210 131 Gene3D Histone, subunit A 22 123 IPR009072 GO:0046982
Psa6g3210 131 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 35 99 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3210 Psa-Chr6 277948276 277949153 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3210 1 121 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.862 4.06e-66 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Psa6g3210 CBFD_NFYB_HMF 2.3e-29 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3210 K08065 - gmx:100779577 210.69